if clustal + edit, make new clustal

diff --git a/src/jalview/appletgui/SeqPanel.java b/src/jalview/appletgui/SeqPanel.java
index 46535b1..889533e 100755 (executable)
--- a/src/jalview/appletgui/SeqPanel.java
+++ b/src/jalview/appletgui/SeqPanel.java
@@ -354,6 +354,14 @@ public class SeqPanel extends Panel
 \r
   void updateConservation(int i)\r
   {\r
+    if (av.getGlobalColourScheme() instanceof jalview.schemes.\r
+        ClustalxColourScheme)\r
+    {\r
+      av.setGlobalColourScheme(\r
+          new jalview.schemes.ClustalxColourScheme(av.alignment.getSequences(),\r
+                                                   av.alignment.getWidth()));\r
+    }\r
+\r
     av.updateConservation();\r
     av.updateConsensus();\r
   }\r

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 3bc9bc5..fc93fbc 100755 (executable)
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -6,8 +6,6 @@ import jalview.datamodel.*;
 import javax.swing.*;\r
 import java.util.*;\r
 import jalview.schemes.*;\r
-import jalview.analysis.*;\r
-\r
 \r
 public class SeqPanel extends JPanel\r
 {\r
@@ -359,6 +357,11 @@ public class SeqPanel extends JPanel
 \r
   void updateConservation(int i)\r
   {\r
+    if(av.getGlobalColourScheme() instanceof jalview.schemes.ClustalxColourScheme)\r
+    {\r
+      av.setGlobalColourScheme(\r
+          new jalview.schemes.ClustalxColourScheme(av.alignment.getSequences(),av.alignment.getWidth() ));\r
+    }\r
     av.updateConservation();\r
     av.updateConsensus();\r
   }\r