-#Tue May 15 19:58:04 BST 2007\r
+#Thu May 24 16:17:26 BST 2007\r
jalview.schemabinding.version2.AnnotationColours=jalview.schemabinding.version2.descriptors.AnnotationColoursDescriptor\r
jalview.schemabinding.version2.Sequence=jalview.schemabinding.version2.descriptors.SequenceDescriptor\r
jalview.schemabinding.version2.SequenceType=jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor\r
jalview.schemabinding.version2.Features=jalview.schemabinding.version2.descriptors.FeaturesDescriptor\r
jalview.schemabinding.version2.SequenceSet=jalview.schemabinding.version2.descriptors.SequenceSetDescriptor\r
jalview.schemabinding.version2.DBRef=jalview.schemabinding.version2.descriptors.DBRefDescriptor\r
-jalview.schemabinding.version2.Colour=jalview.schemabinding.version2.descriptors.ColourDescriptor\r
jalview.schemabinding.version2.Feature=jalview.schemabinding.version2.descriptors.FeatureDescriptor\r
+jalview.schemabinding.version2.Colour=jalview.schemabinding.version2.descriptors.ColourDescriptor\r
jalview.schemabinding.version2.Viewport=jalview.schemabinding.version2.descriptors.ViewportDescriptor\r
-jalview.schemabinding.version2.JalviewModel=jalview.schemabinding.version2.descriptors.JalviewModelDescriptor\r
jalview.schemabinding.version2.JGroup=jalview.schemabinding.version2.descriptors.JGroupDescriptor\r
+jalview.schemabinding.version2.JalviewModel=jalview.schemabinding.version2.descriptors.JalviewModelDescriptor\r
jalview.schemabinding.version2.FeatureSettings=jalview.schemabinding.version2.descriptors.FeatureSettingsDescriptor\r
jalview.schemabinding.version2.UserColourScheme=jalview.schemabinding.version2.descriptors.UserColourSchemeDescriptor\r
-jalview.schemabinding.version2.Pdbids=jalview.schemabinding.version2.descriptors.PdbidsDescriptor\r
-jalview.schemabinding.version2.HiddenColumns=jalview.schemabinding.version2.descriptors.HiddenColumnsDescriptor\r
jalview.schemabinding.version2.Group=jalview.schemabinding.version2.descriptors.GroupDescriptor\r
-jalview.schemabinding.version2.Tree=jalview.schemabinding.version2.descriptors.TreeDescriptor\r
+jalview.schemabinding.version2.HiddenColumns=jalview.schemabinding.version2.descriptors.HiddenColumnsDescriptor\r
+jalview.schemabinding.version2.Pdbids=jalview.schemabinding.version2.descriptors.PdbidsDescriptor\r
jalview.schemabinding.version2.Setting=jalview.schemabinding.version2.descriptors.SettingDescriptor\r
+jalview.schemabinding.version2.Tree=jalview.schemabinding.version2.descriptors.TreeDescriptor\r
jalview.schemabinding.version2.UserColours=jalview.schemabinding.version2.descriptors.UserColoursDescriptor\r
jalview.schemabinding.version2.JSeq=jalview.schemabinding.version2.descriptors.JSeqDescriptor\r
jalview.schemabinding.version2.SequenceSetProperties=jalview.schemabinding.version2.descriptors.SequenceSetPropertiesDescriptor\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class AnnotationColoursDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class AnnotationColoursDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public AnnotationColoursDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "AnnotationColours";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _aboveThreshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_aboveThreshold", "aboveThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationColours target = (AnnotationColours) object;\r
- if(!target.hasAboveThreshold())\r
- return null;\r
- return new java.lang.Integer(target.getAboveThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationColours target = (AnnotationColours) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteAboveThreshold();\r
- return;\r
- }\r
- target.setAboveThreshold( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _aboveThreshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _annotation\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_annotation", "annotation", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationColours target = (AnnotationColours) object;\r
- return target.getAnnotation();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationColours target = (AnnotationColours) object;\r
- target.setAnnotation( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _annotation\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _minColour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_minColour", "minColour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationColours target = (AnnotationColours) object;\r
- if(!target.hasMinColour())\r
- return null;\r
- return new java.lang.Integer(target.getMinColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationColours target = (AnnotationColours) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteMinColour();\r
- return;\r
- }\r
- target.setMinColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _minColour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _maxColour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_maxColour", "maxColour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationColours target = (AnnotationColours) object;\r
- if(!target.hasMaxColour())\r
- return null;\r
- return new java.lang.Integer(target.getMaxColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationColours target = (AnnotationColours) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteMaxColour();\r
- return;\r
- }\r
- target.setMaxColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _maxColour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _colourScheme\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_colourScheme", "colourScheme", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationColours target = (AnnotationColours) object;\r
- return target.getColourScheme();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationColours target = (AnnotationColours) object;\r
- target.setColourScheme( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colourScheme\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _threshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationColours target = (AnnotationColours) object;\r
- if(!target.hasThreshold())\r
- return null;\r
- return new java.lang.Float(target.getThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationColours target = (AnnotationColours) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteThreshold();\r
- return;\r
- }\r
- target.setThreshold( ((java.lang.Float)value).floatValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _threshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- FloatValidator typeValidator = new FloatValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.AnnotationColoursDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.AnnotationColours.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class AnnotationDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class AnnotationDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public AnnotationDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "Annotation";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _graph\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- if(!target.hasGraph())\r
- return null;\r
- return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setGraph( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _graph\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _graphType\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphType", "graphType", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- if(!target.hasGraphType())\r
- return null;\r
- return new java.lang.Integer(target.getGraphType());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteGraphType();\r
- return;\r
- }\r
- target.setGraphType( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _graphType\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _sequenceRef\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceRef", "sequenceRef", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- return target.getSequenceRef();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- target.setSequenceRef( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceRef\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _graphColour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphColour", "graphColour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- if(!target.hasGraphColour())\r
- return null;\r
- return new java.lang.Integer(target.getGraphColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteGraphColour();\r
- return;\r
- }\r
- target.setGraphColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _graphColour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _graphGroup\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphGroup", "graphGroup", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- if(!target.hasGraphGroup())\r
- return null;\r
- return new java.lang.Integer(target.getGraphGroup());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteGraphGroup();\r
- return;\r
- }\r
- target.setGraphGroup( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _graphGroup\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _id\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- return target.getId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- target.setId( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _id\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _scoreOnly\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scoreOnly", "scoreOnly", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- if(!target.hasScoreOnly())\r
- return null;\r
- return (target.getScoreOnly() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteScoreOnly();\r
- return;\r
- }\r
- target.setScoreOnly( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _scoreOnly\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _score\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Double.TYPE, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- if(!target.hasScore())\r
- return null;\r
- return new java.lang.Double(target.getScore());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteScore();\r
- return;\r
- }\r
- target.setScore( ((java.lang.Double)value).doubleValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _score\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- DoubleValidator typeValidator = new DoubleValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _visible\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_visible", "visible", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- if(!target.hasVisible())\r
- return null;\r
- return (target.getVisible() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteVisible();\r
- return;\r
- }\r
- target.setVisible( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _visible\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _annotationElementList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- return target.getAnnotationElement();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- target.addAnnotationElement( (jalview.schemabinding.version2.AnnotationElement) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.AnnotationElement();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _annotationElementList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _label\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- return target.getLabel();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- target.setLabel( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _label\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _description\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- return target.getDescription();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- target.setDescription( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _description\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _thresholdLine\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.ThresholdLine.class, "_thresholdLine", "thresholdLine", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Annotation target = (Annotation) object;\r
- return target.getThresholdLine();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Annotation target = (Annotation) object;\r
- target.setThresholdLine( (jalview.schemabinding.version2.ThresholdLine) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.ThresholdLine();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _thresholdLine\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.AnnotationDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Annotation.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class AnnotationElementDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class AnnotationElementDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public AnnotationElementDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "annotationElement";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _position\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_position", "position", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationElement target = (AnnotationElement) object;\r
- if(!target.hasPosition())\r
- return null;\r
- return new java.lang.Integer(target.getPosition());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationElement target = (AnnotationElement) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setPosition( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _position\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _colour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationElement target = (AnnotationElement) object;\r
- if(!target.hasColour())\r
- return null;\r
- return new java.lang.Integer(target.getColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationElement target = (AnnotationElement) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteColour();\r
- return;\r
- }\r
- target.setColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _displayCharacter\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_displayCharacter", "displayCharacter", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationElement target = (AnnotationElement) object;\r
- return target.getDisplayCharacter();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationElement target = (AnnotationElement) object;\r
- target.setDisplayCharacter( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _displayCharacter\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _description\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationElement target = (AnnotationElement) object;\r
- return target.getDescription();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationElement target = (AnnotationElement) object;\r
- target.setDescription( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _description\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _secondaryStructure\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_secondaryStructure", "secondaryStructure", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationElement target = (AnnotationElement) object;\r
- return target.getSecondaryStructure();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationElement target = (AnnotationElement) object;\r
- target.setSecondaryStructure( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _secondaryStructure\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setLength(1);\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _value\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_value", "value", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- AnnotationElement target = (AnnotationElement) object;\r
- if(!target.hasValue())\r
- return null;\r
- return new java.lang.Float(target.getValue());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- AnnotationElement target = (AnnotationElement) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteValue();\r
- return;\r
- }\r
- target.setValue( ((java.lang.Float)value).floatValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _value\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- FloatValidator typeValidator = new FloatValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.AnnotationElementDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.AnnotationElement.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class ColourDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class ColourDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public ColourDescriptor() {\r
- super();\r
- xmlName = "colour";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _name\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_name", "Name", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Colour target = (Colour) object;\r
- return target.getName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Colour target = (Colour) object;\r
- target.setName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _name\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _RGB\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_RGB", "RGB", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Colour target = (Colour) object;\r
- return target.getRGB();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Colour target = (Colour) object;\r
- target.setRGB( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _RGB\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.ColourDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Colour.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class DBRefDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class DBRefDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public DBRefDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "DBRef";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _source\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_source", "source", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DBRef target = (DBRef) object;\r
- return target.getSource();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DBRef target = (DBRef) object;\r
- target.setSource( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _source\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _version\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_version", "version", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DBRef target = (DBRef) object;\r
- return target.getVersion();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DBRef target = (DBRef) object;\r
- target.setVersion( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _version\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _accessionId\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_accessionId", "accessionId", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- DBRef target = (DBRef) object;\r
- return target.getAccessionId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- DBRef target = (DBRef) object;\r
- target.setAccessionId( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _accessionId\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.DBRefDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.DBRef.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class FeatureDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class FeatureDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public FeatureDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "feature";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _begin\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_begin", "begin", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- if(!target.hasBegin())\r
- return null;\r
- return new java.lang.Integer(target.getBegin());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setBegin( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _begin\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _end\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- if(!target.hasEnd())\r
- return null;\r
- return new java.lang.Integer(target.getEnd());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setEnd( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _end\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _type\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_type", "type", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- return target.getType();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- target.setType( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _type\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _description\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- return target.getDescription();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- target.setDescription( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _description\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _status\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_status", "status", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- return target.getStatus();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- target.setStatus( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _status\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _featureGroup\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_featureGroup", "featureGroup", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- return target.getFeatureGroup();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- target.setFeatureGroup( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _featureGroup\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _score\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- if(!target.hasScore())\r
- return null;\r
- return new java.lang.Float(target.getScore());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteScore();\r
- return;\r
- }\r
- target.setScore( ((java.lang.Float)value).floatValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _score\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- FloatValidator typeValidator = new FloatValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _otherDataList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.OtherData.class, "_otherDataList", "otherData", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Feature target = (Feature) object;\r
- return target.getOtherData();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Feature target = (Feature) object;\r
- target.addOtherData( (jalview.schemabinding.version2.OtherData) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.OtherData();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _otherDataList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.FeatureDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Feature.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class FeatureSettingsDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class FeatureSettingsDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public FeatureSettingsDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "FeatureSettings";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- initialize element descriptors\r
- \r
- //-- _settingList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Setting.class, "_settingList", "setting", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- FeatureSettings target = (FeatureSettings) object;\r
- return target.getSetting();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- FeatureSettings target = (FeatureSettings) object;\r
- target.addSetting( (jalview.schemabinding.version2.Setting) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Setting();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _settingList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _groupList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Group.class, "_groupList", "group", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- FeatureSettings target = (FeatureSettings) object;\r
- return target.getGroup();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- FeatureSettings target = (FeatureSettings) object;\r
- target.addGroup( (jalview.schemabinding.version2.Group) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Group();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _groupList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.FeatureSettingsDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.FeatureSettings.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class FeaturesDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class FeaturesDescriptor extends FeatureDescriptor {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public FeaturesDescriptor() {\r
- super();\r
- setExtendsWithoutFlatten(new FeatureDescriptor());\r
- nsURI = "www.jalview.org";\r
- xmlName = "features";\r
- } //-- jalview.schemabinding.version2.FeaturesDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return super.getExtends();\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- if (identity == null)\r
- return super.getIdentity();\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Features.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class GroupDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class GroupDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public GroupDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "group";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _name\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_name", "name", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Group target = (Group) object;\r
- return target.getName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Group target = (Group) object;\r
- target.setName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _name\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _display\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_display", "display", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Group target = (Group) object;\r
- if(!target.hasDisplay())\r
- return null;\r
- return (target.getDisplay() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Group target = (Group) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setDisplay( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _display\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.GroupDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Group.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class HiddenColumnsDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class HiddenColumnsDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public HiddenColumnsDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "hiddenColumns";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _start\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- HiddenColumns target = (HiddenColumns) object;\r
- if(!target.hasStart())\r
- return null;\r
- return new java.lang.Integer(target.getStart());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- HiddenColumns target = (HiddenColumns) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteStart();\r
- return;\r
- }\r
- target.setStart( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _start\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _end\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- HiddenColumns target = (HiddenColumns) object;\r
- if(!target.hasEnd())\r
- return null;\r
- return new java.lang.Integer(target.getEnd());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- HiddenColumns target = (HiddenColumns) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteEnd();\r
- return;\r
- }\r
- target.setEnd( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _end\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.HiddenColumnsDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.HiddenColumns.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class JGroupDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class JGroupDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public JGroupDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "JGroup";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _start\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasStart())\r
- return null;\r
- return new java.lang.Integer(target.getStart());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteStart();\r
- return;\r
- }\r
- target.setStart( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _start\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _end\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasEnd())\r
- return null;\r
- return new java.lang.Integer(target.getEnd());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteEnd();\r
- return;\r
- }\r
- target.setEnd( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _end\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _name\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_name", "name", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- return target.getName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- target.setName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _name\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _colour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- return target.getColour();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- target.setColour( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _consThreshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_consThreshold", "consThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasConsThreshold())\r
- return null;\r
- return new java.lang.Integer(target.getConsThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteConsThreshold();\r
- return;\r
- }\r
- target.setConsThreshold( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _consThreshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _pidThreshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_pidThreshold", "pidThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasPidThreshold())\r
- return null;\r
- return new java.lang.Integer(target.getPidThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deletePidThreshold();\r
- return;\r
- }\r
- target.setPidThreshold( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _pidThreshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _outlineColour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_outlineColour", "outlineColour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasOutlineColour())\r
- return null;\r
- return new java.lang.Integer(target.getOutlineColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteOutlineColour();\r
- return;\r
- }\r
- target.setOutlineColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _outlineColour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _displayBoxes\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_displayBoxes", "displayBoxes", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasDisplayBoxes())\r
- return null;\r
- return (target.getDisplayBoxes() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteDisplayBoxes();\r
- return;\r
- }\r
- target.setDisplayBoxes( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _displayBoxes\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _displayText\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_displayText", "displayText", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasDisplayText())\r
- return null;\r
- return (target.getDisplayText() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteDisplayText();\r
- return;\r
- }\r
- target.setDisplayText( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _displayText\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _colourText\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_colourText", "colourText", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasColourText())\r
- return null;\r
- return (target.getColourText() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteColourText();\r
- return;\r
- }\r
- target.setColourText( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colourText\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _textCol1\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textCol1", "textCol1", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasTextCol1())\r
- return null;\r
- return new java.lang.Integer(target.getTextCol1());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteTextCol1();\r
- return;\r
- }\r
- target.setTextCol1( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _textCol1\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _textCol2\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textCol2", "textCol2", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasTextCol2())\r
- return null;\r
- return new java.lang.Integer(target.getTextCol2());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteTextCol2();\r
- return;\r
- }\r
- target.setTextCol2( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _textCol2\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _textColThreshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textColThreshold", "textColThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- if(!target.hasTextColThreshold())\r
- return null;\r
- return new java.lang.Integer(target.getTextColThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteTextColThreshold();\r
- return;\r
- }\r
- target.setTextColThreshold( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _textColThreshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _seqList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_seqList", "seq", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JGroup target = (JGroup) object;\r
- return target.getSeq();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JGroup target = (JGroup) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.addSeq( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _seqList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.JGroupDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.JGroup.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class JSeqDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class JSeqDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public JSeqDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "JSeq";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _colour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if(!target.hasColour())\r
- return null;\r
- return new java.lang.Integer(target.getColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteColour();\r
- return;\r
- }\r
- target.setColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _start\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if(!target.hasStart())\r
- return null;\r
- return new java.lang.Integer(target.getStart());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setStart( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _start\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _end\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if(!target.hasEnd())\r
- return null;\r
- return new java.lang.Integer(target.getEnd());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setEnd( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _end\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _id\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if(!target.hasId())\r
- return null;\r
- return new java.lang.Integer(target.getId());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setId( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _id\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _hidden\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_hidden", "hidden", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- if(!target.hasHidden())\r
- return null;\r
- return (target.getHidden() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteHidden();\r
- return;\r
- }\r
- target.setHidden( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _hidden\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _featuresList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Features.class, "_featuresList", "features", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- return target.getFeatures();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.addFeatures( (jalview.schemabinding.version2.Features) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Features();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _featuresList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _pdbidsList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Pdbids.class, "_pdbidsList", "pdbids", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- return target.getPdbids();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- target.addPdbids( (jalview.schemabinding.version2.Pdbids) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Pdbids();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _pdbidsList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _hiddenSequencesList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_hiddenSequencesList", "hiddenSequences", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JSeq target = (JSeq) object;\r
- return target.getHiddenSequences();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JSeq target = (JSeq) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.addHiddenSequences( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _hiddenSequencesList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.JSeqDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.JSeq.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class JalviewModelDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class JalviewModelDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public JalviewModelDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "JalviewModel";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- initialize element descriptors\r
- \r
- //-- _creationDate\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.util.Date.class, "_creationDate", "creationDate", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModel target = (JalviewModel) object;\r
- return target.getCreationDate();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModel target = (JalviewModel) object;\r
- target.setCreationDate( (java.util.Date) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new java.util.Date();\r
- }\r
- } );\r
- desc.setHandler( new org.exolab.castor.xml.handlers.DateFieldHandler(handler));\r
- desc.setImmutable(true);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _creationDate\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _version\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_version", "version", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModel target = (JalviewModel) object;\r
- return target.getVersion();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModel target = (JalviewModel) object;\r
- target.setVersion( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _version\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _vamsasModel\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.VamsasModel.class, "_vamsasModel", "vamsasModel", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModel target = (JalviewModel) object;\r
- return target.getVamsasModel();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModel target = (JalviewModel) object;\r
- target.setVamsasModel( (jalview.schemabinding.version2.VamsasModel) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.VamsasModel();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _vamsasModel\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _jalviewModelSequence\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JalviewModelSequence.class, "_jalviewModelSequence", "-error-if-this-is-used-", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModel target = (JalviewModel) object;\r
- return target.getJalviewModelSequence();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModel target = (JalviewModel) object;\r
- target.setJalviewModelSequence( (jalview.schemabinding.version2.JalviewModelSequence) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.JalviewModelSequence();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setContainer(true);\r
- desc.setClassDescriptor(new jalview.schemabinding.version2.JalviewModelSequenceDescriptor());\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _jalviewModelSequence\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.JalviewModelDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.JalviewModel.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class JalviewModelSequenceDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class JalviewModelSequenceDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public JalviewModelSequenceDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- initialize element descriptors\r
- \r
- //-- _JSeqList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JSeq.class, "_JSeqList", "JSeq", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- return target.getJSeq();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- target.addJSeq( (jalview.schemabinding.version2.JSeq) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.JSeq();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _JSeqList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _JGroupList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JGroup.class, "_JGroupList", "JGroup", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- return target.getJGroup();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- target.addJGroup( (jalview.schemabinding.version2.JGroup) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.JGroup();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _JGroupList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _viewportList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Viewport.class, "_viewportList", "Viewport", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- return target.getViewport();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- target.addViewport( (jalview.schemabinding.version2.Viewport) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Viewport();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _viewportList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _userColoursList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.UserColours.class, "_userColoursList", "UserColours", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- return target.getUserColours();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- target.addUserColours( (jalview.schemabinding.version2.UserColours) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.UserColours();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _userColoursList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _treeList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Tree.class, "_treeList", "tree", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- return target.getTree();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- target.addTree( (jalview.schemabinding.version2.Tree) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Tree();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _treeList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _featureSettings\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.FeatureSettings.class, "_featureSettings", "FeatureSettings", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- return target.getFeatureSettings();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewModelSequence target = (JalviewModelSequence) object;\r
- target.setFeatureSettings( (jalview.schemabinding.version2.FeatureSettings) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.FeatureSettings();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _featureSettings\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.JalviewModelSequenceDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.JalviewModelSequence.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class JalviewUserColoursDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class JalviewUserColoursDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public JalviewUserColoursDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org/colours";\r
- xmlName = "JalviewUserColours";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _schemeName\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_schemeName", "schemeName", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewUserColours target = (JalviewUserColours) object;\r
- return target.getSchemeName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewUserColours target = (JalviewUserColours) object;\r
- target.setSchemeName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _schemeName\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _colourList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Colour.class, "_colourList", "colour", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- JalviewUserColours target = (JalviewUserColours) object;\r
- return target.getColour();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- JalviewUserColours target = (JalviewUserColours) object;\r
- target.addColour( (jalview.schemabinding.version2.Colour) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Colour();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colourList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.JalviewUserColoursDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.JalviewUserColours.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class OtherDataDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class OtherDataDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public OtherDataDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "otherData";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _key\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_key", "key", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- OtherData target = (OtherData) object;\r
- return target.getKey();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- OtherData target = (OtherData) object;\r
- target.setKey( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _key\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _value\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_value", "value", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- OtherData target = (OtherData) object;\r
- return target.getValue();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- OtherData target = (OtherData) object;\r
- target.setValue( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _value\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.OtherDataDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.OtherData.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class PdbentryDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class PdbentryDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public PdbentryDescriptor() {\r
- super();\r
- xmlName = "pdbentry";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _id\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Pdbentry target = (Pdbentry) object;\r
- return target.getId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Pdbentry target = (Pdbentry) object;\r
- target.setId( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _id\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _type\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_type", "type", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Pdbentry target = (Pdbentry) object;\r
- return target.getType();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Pdbentry target = (Pdbentry) object;\r
- target.setType( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _type\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _file\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_file", "file", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Pdbentry target = (Pdbentry) object;\r
- return target.getFile();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Pdbentry target = (Pdbentry) object;\r
- target.setFile( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _file\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _items\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.PdbentryItem.class, "_items", (String)null, org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Pdbentry target = (Pdbentry) object;\r
- return target.getPdbentryItem();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Pdbentry target = (Pdbentry) object;\r
- target.addPdbentryItem( (jalview.schemabinding.version2.PdbentryItem) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.PdbentryItem();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setContainer(true);\r
- desc.setClassDescriptor(new jalview.schemabinding.version2.PdbentryItemDescriptor());\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _items\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.PdbentryDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Pdbentry.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class PdbentryItemDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class PdbentryItemDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public PdbentryItemDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "pdbentry";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- initialize element descriptors\r
- \r
- //-- _propertyList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Property.class, "_propertyList", "property", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- PdbentryItem target = (PdbentryItem) object;\r
- return target.getProperty();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- PdbentryItem target = (PdbentryItem) object;\r
- target.addProperty( (jalview.schemabinding.version2.Property) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Property();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _propertyList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.PdbentryItemDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.PdbentryItem.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class PdbidsDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class PdbidsDescriptor extends jalview.schemabinding.version2.PdbentryDescriptor {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public PdbidsDescriptor() {\r
- super();\r
- setExtendsWithoutFlatten(new jalview.schemabinding.version2.PdbentryDescriptor());\r
- nsURI = "www.jalview.org";\r
- xmlName = "pdbids";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- initialize element descriptors\r
- \r
- //-- _structureStateList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.StructureState.class, "_structureStateList", "structureState", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Pdbids target = (Pdbids) object;\r
- return target.getStructureState();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Pdbids target = (Pdbids) object;\r
- target.addStructureState( (jalview.schemabinding.version2.StructureState) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.StructureState();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _structureStateList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.PdbidsDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return super.getExtends();\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- if (identity == null)\r
- return super.getIdentity();\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Pdbids.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class PropertyDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class PropertyDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public PropertyDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "property";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _name\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_name", "name", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Property target = (Property) object;\r
- return target.getName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Property target = (Property) object;\r
- target.setName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _name\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _value\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_value", "value", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Property target = (Property) object;\r
- return target.getValue();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Property target = (Property) object;\r
- target.setValue( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _value\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.PropertyDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Property.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class SequenceDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class SequenceDescriptor extends jalview.schemabinding.version2.SequenceTypeDescriptor {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public SequenceDescriptor() {\r
- super();\r
- setExtendsWithoutFlatten(new jalview.schemabinding.version2.SequenceTypeDescriptor());\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "Sequence";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- initialize element descriptors\r
- \r
- //-- _DBRefList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.DBRef.class, "_DBRefList", "DBRef", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Sequence target = (Sequence) object;\r
- return target.getDBRef();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Sequence target = (Sequence) object;\r
- target.addDBRef( (jalview.schemabinding.version2.DBRef) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.DBRef();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _DBRefList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.SequenceDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return super.getExtends();\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- if (identity == null)\r
- return super.getIdentity();\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Sequence.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class SequenceSetDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public SequenceSetDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "SequenceSet";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _gapChar\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getGapChar();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.setGapChar( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _gapChar\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _sequenceList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getSequence();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addSequence( (jalview.schemabinding.version2.Sequence) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Sequence();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _annotationList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getAnnotation();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.Annotation();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _annotationList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _sequenceSetPropertiesList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getSequenceSetProperties();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.SequenceSetProperties();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceSetPropertiesList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.SequenceSetDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.SequenceSet.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class SequenceSetPropertiesDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class SequenceSetPropertiesDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public SequenceSetPropertiesDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "sequenceSetProperties";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _key\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_key", "key", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSetProperties target = (SequenceSetProperties) object;\r
- return target.getKey();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSetProperties target = (SequenceSetProperties) object;\r
- target.setKey( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _key\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _value\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_value", "value", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSetProperties target = (SequenceSetProperties) object;\r
- return target.getValue();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSetProperties target = (SequenceSetProperties) object;\r
- target.setValue( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _value\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.SequenceSetPropertiesDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.SequenceSetProperties.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class SequenceTypeDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class SequenceTypeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public SequenceTypeDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "SequenceType";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _id\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceType target = (SequenceType) object;\r
- return target.getId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceType target = (SequenceType) object;\r
- target.setId( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _id\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _description\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceType target = (SequenceType) object;\r
- return target.getDescription();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceType target = (SequenceType) object;\r
- target.setDescription( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _description\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _sequence\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequence", "sequence", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceType target = (SequenceType) object;\r
- return target.getSequence();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceType target = (SequenceType) object;\r
- target.setSequence( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequence\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _name\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_name", "name", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceType target = (SequenceType) object;\r
- return target.getName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceType target = (SequenceType) object;\r
- target.setName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _name\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.SequenceTypeDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.SequenceType.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class SettingDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class SettingDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public SettingDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "setting";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _type\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_type", "type", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Setting target = (Setting) object;\r
- return target.getType();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Setting target = (Setting) object;\r
- target.setType( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _type\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _colour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Setting target = (Setting) object;\r
- if(!target.hasColour())\r
- return null;\r
- return new java.lang.Integer(target.getColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Setting target = (Setting) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _display\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_display", "display", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Setting target = (Setting) object;\r
- if(!target.hasDisplay())\r
- return null;\r
- return (target.getDisplay() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Setting target = (Setting) object;\r
- // ignore null values for non optional primitives\r
- if (value == null) return;\r
- \r
- target.setDisplay( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _display\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _order\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_order", "order", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Setting target = (Setting) object;\r
- if(!target.hasOrder())\r
- return null;\r
- return new java.lang.Float(target.getOrder());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Setting target = (Setting) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteOrder();\r
- return;\r
- }\r
- target.setOrder( ((java.lang.Float)value).floatValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _order\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- FloatValidator typeValidator = new FloatValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.SettingDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Setting.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
- //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.mapping.AccessMode;
-import org.exolab.castor.xml.TypeValidator;
-import org.exolab.castor.xml.XMLFieldDescriptor;
-import org.exolab.castor.xml.validators.*;
-
-/**
- * Class StructureStateDescriptor.
- *
- * @version $Revision$ $Date$
- */
-public class StructureStateDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * Field nsPrefix
- */
- private java.lang.String nsPrefix;
-
- /**
- * Field nsURI
- */
- private java.lang.String nsURI;
-
- /**
- * Field xmlName
- */
- private java.lang.String xmlName;
-
- /**
- * Field identity
- */
- private org.exolab.castor.xml.XMLFieldDescriptor identity;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public StructureStateDescriptor() {
- super();
- nsURI = "www.jalview.org";
- xmlName = "structureState";
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
- org.exolab.castor.xml.XMLFieldHandler handler = null;
- org.exolab.castor.xml.FieldValidator fieldValidator = null;
- //-- _content
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_content", "PCDATA", org.exolab.castor.xml.NodeType.Text);
- desc.setImmutable(true);
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {
- public java.lang.Object getValue( java.lang.Object object )
- throws IllegalStateException
- {
- StructureState target = (StructureState) object;
- return target.getContent();
- }
- public void setValue( java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try {
- StructureState target = (StructureState) object;
- target.setContent( (java.lang.String) value);
- }
- catch (java.lang.Exception ex) {
- throw new IllegalStateException(ex.toString());
- }
- }
- public java.lang.Object newInstance( java.lang.Object parent ) {
- return null;
- }
- } );
- desc.setHandler(handler);
- addFieldDescriptor(desc);
-
- //-- validation code for: _content
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- { //-- local scope
- StringValidator typeValidator = new StringValidator();
- typeValidator.setWhiteSpace("preserve");
- fieldValidator.setValidator(typeValidator);
- }
- desc.setValidator(fieldValidator);
- //-- initialize attribute descriptors
-
- //-- _visible
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_visible", "visible", org.exolab.castor.xml.NodeType.Attribute);
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {
- public java.lang.Object getValue( java.lang.Object object )
- throws IllegalStateException
- {
- StructureState target = (StructureState) object;
- if(!target.hasVisible())
- return null;
- return (target.getVisible() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
- }
- public void setValue( java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try {
- StructureState target = (StructureState) object;
- // if null, use delete method for optional primitives
- if (value == null) {
- target.deleteVisible();
- return;
- }
- target.setVisible( ((java.lang.Boolean)value).booleanValue());
- }
- catch (java.lang.Exception ex) {
- throw new IllegalStateException(ex.toString());
- }
- }
- public java.lang.Object newInstance( java.lang.Object parent ) {
- return null;
- }
- } );
- desc.setHandler(handler);
- addFieldDescriptor(desc);
-
- //-- validation code for: _visible
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- { //-- local scope
- BooleanValidator typeValidator = new BooleanValidator();
- fieldValidator.setValidator(typeValidator);
- }
- desc.setValidator(fieldValidator);
- //-- _xpos
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_xpos", "xpos", org.exolab.castor.xml.NodeType.Attribute);
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {
- public java.lang.Object getValue( java.lang.Object object )
- throws IllegalStateException
- {
- StructureState target = (StructureState) object;
- if(!target.hasXpos())
- return null;
- return new java.lang.Integer(target.getXpos());
- }
- public void setValue( java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try {
- StructureState target = (StructureState) object;
- // if null, use delete method for optional primitives
- if (value == null) {
- target.deleteXpos();
- return;
- }
- target.setXpos( ((java.lang.Integer)value).intValue());
- }
- catch (java.lang.Exception ex) {
- throw new IllegalStateException(ex.toString());
- }
- }
- public java.lang.Object newInstance( java.lang.Object parent ) {
- return null;
- }
- } );
- desc.setHandler(handler);
- addFieldDescriptor(desc);
-
- //-- validation code for: _xpos
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- { //-- local scope
- IntegerValidator typeValidator= new IntegerValidator();
- fieldValidator.setValidator(typeValidator);
- }
- desc.setValidator(fieldValidator);
- //-- _ypos
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_ypos", "ypos", org.exolab.castor.xml.NodeType.Attribute);
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {
- public java.lang.Object getValue( java.lang.Object object )
- throws IllegalStateException
- {
- StructureState target = (StructureState) object;
- if(!target.hasYpos())
- return null;
- return new java.lang.Integer(target.getYpos());
- }
- public void setValue( java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try {
- StructureState target = (StructureState) object;
- // if null, use delete method for optional primitives
- if (value == null) {
- target.deleteYpos();
- return;
- }
- target.setYpos( ((java.lang.Integer)value).intValue());
- }
- catch (java.lang.Exception ex) {
- throw new IllegalStateException(ex.toString());
- }
- }
- public java.lang.Object newInstance( java.lang.Object parent ) {
- return null;
- }
- } );
- desc.setHandler(handler);
- addFieldDescriptor(desc);
-
- //-- validation code for: _ypos
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- { //-- local scope
- IntegerValidator typeValidator= new IntegerValidator();
- fieldValidator.setValidator(typeValidator);
- }
- desc.setValidator(fieldValidator);
- //-- _width
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_width", "width", org.exolab.castor.xml.NodeType.Attribute);
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {
- public java.lang.Object getValue( java.lang.Object object )
- throws IllegalStateException
- {
- StructureState target = (StructureState) object;
- if(!target.hasWidth())
- return null;
- return new java.lang.Integer(target.getWidth());
- }
- public void setValue( java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try {
- StructureState target = (StructureState) object;
- // if null, use delete method for optional primitives
- if (value == null) {
- target.deleteWidth();
- return;
- }
- target.setWidth( ((java.lang.Integer)value).intValue());
- }
- catch (java.lang.Exception ex) {
- throw new IllegalStateException(ex.toString());
- }
- }
- public java.lang.Object newInstance( java.lang.Object parent ) {
- return null;
- }
- } );
- desc.setHandler(handler);
- addFieldDescriptor(desc);
-
- //-- validation code for: _width
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- { //-- local scope
- IntegerValidator typeValidator= new IntegerValidator();
- fieldValidator.setValidator(typeValidator);
- }
- desc.setValidator(fieldValidator);
- //-- _height
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_height", "height", org.exolab.castor.xml.NodeType.Attribute);
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {
- public java.lang.Object getValue( java.lang.Object object )
- throws IllegalStateException
- {
- StructureState target = (StructureState) object;
- if(!target.hasHeight())
- return null;
- return new java.lang.Integer(target.getHeight());
- }
- public void setValue( java.lang.Object object, java.lang.Object value)
- throws IllegalStateException, IllegalArgumentException
- {
- try {
- StructureState target = (StructureState) object;
- // if null, use delete method for optional primitives
- if (value == null) {
- target.deleteHeight();
- return;
- }
- target.setHeight( ((java.lang.Integer)value).intValue());
- }
- catch (java.lang.Exception ex) {
- throw new IllegalStateException(ex.toString());
- }
- }
- public java.lang.Object newInstance( java.lang.Object parent ) {
- return null;
- }
- } );
- desc.setHandler(handler);
- addFieldDescriptor(desc);
-
- //-- validation code for: _height
- fieldValidator = new org.exolab.castor.xml.FieldValidator();
- { //-- local scope
- IntegerValidator typeValidator= new IntegerValidator();
- fieldValidator.setValidator(typeValidator);
- }
- desc.setValidator(fieldValidator);
- //-- initialize element descriptors
-
- } //-- jalview.schemabinding.version2.StructureStateDescriptor()
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- * Method getAccessMode
- *
- *
- *
- * @return AccessMode
- */
- public org.exolab.castor.mapping.AccessMode getAccessMode()
- {
- return null;
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
-
- /**
- * Method getExtends
- *
- *
- *
- * @return ClassDescriptor
- */
- public org.exolab.castor.mapping.ClassDescriptor getExtends()
- {
- return null;
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
-
- /**
- * Method getIdentity
- *
- *
- *
- * @return FieldDescriptor
- */
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()
- {
- return identity;
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
-
- /**
- * Method getJavaClass
- *
- *
- *
- * @return Class
- */
- public java.lang.Class getJavaClass()
- {
- return jalview.schemabinding.version2.StructureState.class;
- } //-- java.lang.Class getJavaClass()
-
- /**
- * Method getNameSpacePrefix
- *
- *
- *
- * @return String
- */
- public java.lang.String getNameSpacePrefix()
- {
- return nsPrefix;
- } //-- java.lang.String getNameSpacePrefix()
-
- /**
- * Method getNameSpaceURI
- *
- *
- *
- * @return String
- */
- public java.lang.String getNameSpaceURI()
- {
- return nsURI;
- } //-- java.lang.String getNameSpaceURI()
-
- /**
- * Method getValidator
- *
- *
- *
- * @return TypeValidator
- */
- public org.exolab.castor.xml.TypeValidator getValidator()
- {
- return this;
- } //-- org.exolab.castor.xml.TypeValidator getValidator()
-
- /**
- * Method getXMLName
- *
- *
- *
- * @return String
- */
- public java.lang.String getXMLName()
- {
- return xmlName;
- } //-- java.lang.String getXMLName()
-
-}
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class ThresholdLineDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class ThresholdLineDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public ThresholdLineDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "thresholdLine";\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _label\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- ThresholdLine target = (ThresholdLine) object;\r
- return target.getLabel();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- ThresholdLine target = (ThresholdLine) object;\r
- target.setLabel( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _label\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _value\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_value", "value", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- ThresholdLine target = (ThresholdLine) object;\r
- if(!target.hasValue())\r
- return null;\r
- return new java.lang.Float(target.getValue());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- ThresholdLine target = (ThresholdLine) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteValue();\r
- return;\r
- }\r
- target.setValue( ((java.lang.Float)value).floatValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _value\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- FloatValidator typeValidator = new FloatValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _colour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- ThresholdLine target = (ThresholdLine) object;\r
- if(!target.hasColour())\r
- return null;\r
- return new java.lang.Integer(target.getColour());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- ThresholdLine target = (ThresholdLine) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteColour();\r
- return;\r
- }\r
- target.setColour( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _colour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- } //-- jalview.schemabinding.version2.ThresholdLineDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.ThresholdLine.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class TreeDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class TreeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public TreeDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "tree";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _width\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_width", "width", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasWidth())\r
- return null;\r
- return new java.lang.Integer(target.getWidth());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteWidth();\r
- return;\r
- }\r
- target.setWidth( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _width\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _height\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_height", "height", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasHeight())\r
- return null;\r
- return new java.lang.Integer(target.getHeight());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteHeight();\r
- return;\r
- }\r
- target.setHeight( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _height\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _xpos\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_xpos", "xpos", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasXpos())\r
- return null;\r
- return new java.lang.Integer(target.getXpos());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteXpos();\r
- return;\r
- }\r
- target.setXpos( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _xpos\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _ypos\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_ypos", "ypos", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasYpos())\r
- return null;\r
- return new java.lang.Integer(target.getYpos());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteYpos();\r
- return;\r
- }\r
- target.setYpos( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _ypos\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _fontName\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_fontName", "fontName", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- return target.getFontName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- target.setFontName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _fontName\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _fontSize\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontSize", "fontSize", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasFontSize())\r
- return null;\r
- return new java.lang.Integer(target.getFontSize());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteFontSize();\r
- return;\r
- }\r
- target.setFontSize( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _fontSize\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _fontStyle\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontStyle", "fontStyle", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasFontStyle())\r
- return null;\r
- return new java.lang.Integer(target.getFontStyle());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteFontStyle();\r
- return;\r
- }\r
- target.setFontStyle( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _fontStyle\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _threshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_threshold", "threshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasThreshold())\r
- return null;\r
- return new java.lang.Float(target.getThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteThreshold();\r
- return;\r
- }\r
- target.setThreshold( ((java.lang.Float)value).floatValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _threshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- FloatValidator typeValidator = new FloatValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showBootstrap\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showBootstrap", "showBootstrap", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasShowBootstrap())\r
- return null;\r
- return (target.getShowBootstrap() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowBootstrap();\r
- return;\r
- }\r
- target.setShowBootstrap( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showBootstrap\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showDistances\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showDistances", "showDistances", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasShowDistances())\r
- return null;\r
- return (target.getShowDistances() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowDistances();\r
- return;\r
- }\r
- target.setShowDistances( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showDistances\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _markUnlinked\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_markUnlinked", "markUnlinked", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasMarkUnlinked())\r
- return null;\r
- return (target.getMarkUnlinked() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteMarkUnlinked();\r
- return;\r
- }\r
- target.setMarkUnlinked( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _markUnlinked\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _fitToWindow\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_fitToWindow", "fitToWindow", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasFitToWindow())\r
- return null;\r
- return (target.getFitToWindow() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteFitToWindow();\r
- return;\r
- }\r
- target.setFitToWindow( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _fitToWindow\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _currentTree\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_currentTree", "currentTree", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- if(!target.hasCurrentTree())\r
- return null;\r
- return (target.getCurrentTree() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteCurrentTree();\r
- return;\r
- }\r
- target.setCurrentTree( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _currentTree\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _title\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_title", "title", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- return target.getTitle();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- target.setTitle( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _title\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _newick\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_newick", "newick", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Tree target = (Tree) object;\r
- return target.getNewick();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Tree target = (Tree) object;\r
- target.setNewick( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _newick\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.TreeDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Tree.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class UserColourSchemeDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class UserColourSchemeDescriptor extends JalviewUserColoursDescriptor {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public UserColourSchemeDescriptor() {\r
- super();\r
- setExtendsWithoutFlatten(new JalviewUserColoursDescriptor());\r
- nsURI = "www.jalview.org";\r
- xmlName = "UserColourScheme";\r
- } //-- jalview.schemabinding.version2.UserColourSchemeDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return super.getExtends();\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- if (identity == null)\r
- return super.getIdentity();\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.UserColourScheme.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class UserColoursDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class UserColoursDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public UserColoursDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "UserColours";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _id\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- UserColours target = (UserColours) object;\r
- return target.getId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- UserColours target = (UserColours) object;\r
- target.setId( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _id\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _userColourScheme\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.UserColourScheme.class, "_userColourScheme", "UserColourScheme", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- UserColours target = (UserColours) object;\r
- return target.getUserColourScheme();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- UserColours target = (UserColours) object;\r
- target.setUserColourScheme( (jalview.schemabinding.version2.UserColourScheme) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.UserColourScheme();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _userColourScheme\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.UserColoursDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.UserColours.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class VAMSASDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class VAMSASDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public VAMSASDescriptor() {\r
- super();\r
- nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- xmlName = "VAMSAS";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- initialize element descriptors\r
- \r
- //-- _treeList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- VAMSAS target = (VAMSAS) object;\r
- return target.getTree();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- VAMSAS target = (VAMSAS) object;\r
- target.addTree( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _treeList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _sequenceSetList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSet.class, "_sequenceSetList", "SequenceSet", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- VAMSAS target = (VAMSAS) object;\r
- return target.getSequenceSet();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- VAMSAS target = (VAMSAS) object;\r
- target.addSequenceSet( (jalview.schemabinding.version2.SequenceSet) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.SequenceSet();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceSetList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.VAMSASDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.VAMSAS.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class VamsasModelDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class VamsasModelDescriptor extends VAMSASDescriptor {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public VamsasModelDescriptor() {\r
- super();\r
- setExtendsWithoutFlatten(new VAMSASDescriptor());\r
- nsURI = "www.jalview.org";\r
- xmlName = "vamsasModel";\r
- } //-- jalview.schemabinding.version2.VamsasModelDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return super.getExtends();\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- if (identity == null)\r
- return super.getIdentity();\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.VamsasModel.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
+++ /dev/null
-/*\r
- * This class was automatically generated with \r
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
- * Schema.\r
- * $Id$\r
- */\r
-\r
-package jalview.schemabinding.version2;\r
-\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import org.exolab.castor.mapping.AccessMode;\r
-import org.exolab.castor.xml.TypeValidator;\r
-import org.exolab.castor.xml.XMLFieldDescriptor;\r
-import org.exolab.castor.xml.validators.*;\r
-\r
-/**\r
- * Class ViewportDescriptor.\r
- * \r
- * @version $Revision$ $Date$\r
- */\r
-public class ViewportDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field nsPrefix\r
- */\r
- private java.lang.String nsPrefix;\r
-\r
- /**\r
- * Field nsURI\r
- */\r
- private java.lang.String nsURI;\r
-\r
- /**\r
- * Field xmlName\r
- */\r
- private java.lang.String xmlName;\r
-\r
- /**\r
- * Field identity\r
- */\r
- private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public ViewportDescriptor() {\r
- super();\r
- nsURI = "www.jalview.org";\r
- xmlName = "Viewport";\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.xml.XMLFieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _conservationSelected\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_conservationSelected", "conservationSelected", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasConservationSelected())\r
- return null;\r
- return (target.getConservationSelected() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteConservationSelected();\r
- return;\r
- }\r
- target.setConservationSelected( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _conservationSelected\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _pidSelected\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_pidSelected", "pidSelected", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasPidSelected())\r
- return null;\r
- return (target.getPidSelected() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deletePidSelected();\r
- return;\r
- }\r
- target.setPidSelected( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _pidSelected\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _bgColour\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_bgColour", "bgColour", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- return target.getBgColour();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- target.setBgColour( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _bgColour\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _consThreshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_consThreshold", "consThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasConsThreshold())\r
- return null;\r
- return new java.lang.Integer(target.getConsThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteConsThreshold();\r
- return;\r
- }\r
- target.setConsThreshold( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _consThreshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _pidThreshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_pidThreshold", "pidThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasPidThreshold())\r
- return null;\r
- return new java.lang.Integer(target.getPidThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deletePidThreshold();\r
- return;\r
- }\r
- target.setPidThreshold( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _pidThreshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _title\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_title", "title", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- return target.getTitle();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- target.setTitle( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _title\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showFullId\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showFullId", "showFullId", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasShowFullId())\r
- return null;\r
- return (target.getShowFullId() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowFullId();\r
- return;\r
- }\r
- target.setShowFullId( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showFullId\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _rightAlignIds\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_rightAlignIds", "rightAlignIds", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasRightAlignIds())\r
- return null;\r
- return (target.getRightAlignIds() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteRightAlignIds();\r
- return;\r
- }\r
- target.setRightAlignIds( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _rightAlignIds\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showText\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showText", "showText", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasShowText())\r
- return null;\r
- return (target.getShowText() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowText();\r
- return;\r
- }\r
- target.setShowText( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showText\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showColourText\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showColourText", "showColourText", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasShowColourText())\r
- return null;\r
- return (target.getShowColourText() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowColourText();\r
- return;\r
- }\r
- target.setShowColourText( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showColourText\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showBoxes\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showBoxes", "showBoxes", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasShowBoxes())\r
- return null;\r
- return (target.getShowBoxes() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowBoxes();\r
- return;\r
- }\r
- target.setShowBoxes( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showBoxes\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _wrapAlignment\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_wrapAlignment", "wrapAlignment", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasWrapAlignment())\r
- return null;\r
- return (target.getWrapAlignment() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteWrapAlignment();\r
- return;\r
- }\r
- target.setWrapAlignment( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _wrapAlignment\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _renderGaps\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_renderGaps", "renderGaps", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasRenderGaps())\r
- return null;\r
- return (target.getRenderGaps() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteRenderGaps();\r
- return;\r
- }\r
- target.setRenderGaps( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _renderGaps\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showSequenceFeatures\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showSequenceFeatures", "showSequenceFeatures", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasShowSequenceFeatures())\r
- return null;\r
- return (target.getShowSequenceFeatures() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowSequenceFeatures();\r
- return;\r
- }\r
- target.setShowSequenceFeatures( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showSequenceFeatures\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _showAnnotation\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showAnnotation", "showAnnotation", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasShowAnnotation())\r
- return null;\r
- return (target.getShowAnnotation() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteShowAnnotation();\r
- return;\r
- }\r
- target.setShowAnnotation( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _showAnnotation\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _xpos\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_xpos", "xpos", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasXpos())\r
- return null;\r
- return new java.lang.Integer(target.getXpos());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteXpos();\r
- return;\r
- }\r
- target.setXpos( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _xpos\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _ypos\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_ypos", "ypos", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasYpos())\r
- return null;\r
- return new java.lang.Integer(target.getYpos());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteYpos();\r
- return;\r
- }\r
- target.setYpos( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _ypos\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _width\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_width", "width", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasWidth())\r
- return null;\r
- return new java.lang.Integer(target.getWidth());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteWidth();\r
- return;\r
- }\r
- target.setWidth( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _width\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _height\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_height", "height", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasHeight())\r
- return null;\r
- return new java.lang.Integer(target.getHeight());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteHeight();\r
- return;\r
- }\r
- target.setHeight( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _height\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _startRes\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_startRes", "startRes", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasStartRes())\r
- return null;\r
- return new java.lang.Integer(target.getStartRes());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteStartRes();\r
- return;\r
- }\r
- target.setStartRes( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _startRes\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _startSeq\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_startSeq", "startSeq", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasStartSeq())\r
- return null;\r
- return new java.lang.Integer(target.getStartSeq());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteStartSeq();\r
- return;\r
- }\r
- target.setStartSeq( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _startSeq\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _fontName\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_fontName", "fontName", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- return target.getFontName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- target.setFontName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _fontName\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _fontSize\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontSize", "fontSize", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasFontSize())\r
- return null;\r
- return new java.lang.Integer(target.getFontSize());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteFontSize();\r
- return;\r
- }\r
- target.setFontSize( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _fontSize\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _fontStyle\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_fontStyle", "fontStyle", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasFontStyle())\r
- return null;\r
- return new java.lang.Integer(target.getFontStyle());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteFontStyle();\r
- return;\r
- }\r
- target.setFontStyle( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _fontStyle\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _viewName\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_viewName", "viewName", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- return target.getViewName();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- target.setViewName( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _viewName\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _sequenceSetId\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceSetId", "sequenceSetId", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- return target.getSequenceSetId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- target.setSequenceSetId( (java.lang.String) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceSetId\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- StringValidator typeValidator = new StringValidator();\r
- typeValidator.setWhiteSpace("preserve");\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _gatheredViews\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_gatheredViews", "gatheredViews", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasGatheredViews())\r
- return null;\r
- return (target.getGatheredViews() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteGatheredViews();\r
- return;\r
- }\r
- target.setGatheredViews( ((java.lang.Boolean)value).booleanValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _gatheredViews\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- BooleanValidator typeValidator = new BooleanValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _textCol1\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textCol1", "textCol1", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasTextCol1())\r
- return null;\r
- return new java.lang.Integer(target.getTextCol1());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteTextCol1();\r
- return;\r
- }\r
- target.setTextCol1( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _textCol1\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _textCol2\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textCol2", "textCol2", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasTextCol2())\r
- return null;\r
- return new java.lang.Integer(target.getTextCol2());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteTextCol2();\r
- return;\r
- }\r
- target.setTextCol2( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _textCol2\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _textColThreshold\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textColThreshold", "textColThreshold", org.exolab.castor.xml.NodeType.Attribute);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- if(!target.hasTextColThreshold())\r
- return null;\r
- return new java.lang.Integer(target.getTextColThreshold());\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- // if null, use delete method for optional primitives \r
- if (value == null) {\r
- target.deleteTextColThreshold();\r
- return;\r
- }\r
- target.setTextColThreshold( ((java.lang.Integer)value).intValue());\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return null;\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _textColThreshold\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- IntegerValidator typeValidator= new IntegerValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _annotationColours\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationColours.class, "_annotationColours", "AnnotationColours", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- return target.getAnnotationColours();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- target.setAnnotationColours( (jalview.schemabinding.version2.AnnotationColours) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.AnnotationColours();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _annotationColours\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- //-- _hiddenColumnsList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.HiddenColumns.class, "_hiddenColumnsList", "hiddenColumns", org.exolab.castor.xml.NodeType.Element);\r
- handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- Viewport target = (Viewport) object;\r
- return target.getHiddenColumns();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- Viewport target = (Viewport) object;\r
- target.addHiddenColumns( (jalview.schemabinding.version2.HiddenColumns) value);\r
- }\r
- catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance( java.lang.Object parent ) {\r
- return new jalview.schemabinding.version2.HiddenColumns();\r
- }\r
- } );\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.jalview.org");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _hiddenColumnsList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
- }\r
- desc.setValidator(fieldValidator);\r
- } //-- jalview.schemabinding.version2.ViewportDescriptor()\r
-\r
-\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
-\r
- /**\r
- * Method getAccessMode\r
- * \r
- * \r
- * \r
- * @return AccessMode\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
-\r
- /**\r
- * Method getExtends\r
- * \r
- * \r
- * \r
- * @return ClassDescriptor\r
- */\r
- public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
- {\r
- return null;\r
- } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
-\r
- /**\r
- * Method getIdentity\r
- * \r
- * \r
- * \r
- * @return FieldDescriptor\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
- {\r
- return identity;\r
- } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
-\r
- /**\r
- * Method getJavaClass\r
- * \r
- * \r
- * \r
- * @return Class\r
- */\r
- public java.lang.Class getJavaClass()\r
- {\r
- return jalview.schemabinding.version2.Viewport.class;\r
- } //-- java.lang.Class getJavaClass() \r
-\r
- /**\r
- * Method getNameSpacePrefix\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpacePrefix()\r
- {\r
- return nsPrefix;\r
- } //-- java.lang.String getNameSpacePrefix() \r
-\r
- /**\r
- * Method getNameSpaceURI\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getNameSpaceURI()\r
- {\r
- return nsURI;\r
- } //-- java.lang.String getNameSpaceURI() \r
-\r
- /**\r
- * Method getValidator\r
- * \r
- * \r
- * \r
- * @return TypeValidator\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator()\r
- {\r
- return this;\r
- } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
-\r
- /**\r
- * Method getXMLName\r
- * \r
- * \r
- * \r
- * @return String\r
- */\r
- public java.lang.String getXMLName()\r
- {\r
- return xmlName;\r
- } //-- java.lang.String getXMLName() \r
-\r
-}\r
git://source.jalview.org / jalview.git / commitdiff