import jalview.ws.rest.InputType.molType;
import java.io.BufferedOutputStream;
+import java.io.ByteArrayOutputStream;
import java.io.File;
import java.io.FileOutputStream;
import java.io.OutputStreamWriter;
import java.io.PrintWriter;
+import java.io.StringWriter;
import java.io.UnsupportedEncodingException;
+import java.net.URLEncoder;
import java.nio.charset.Charset;
import org.apache.http.entity.mime.content.ContentBody;
throw new NoValidInputDataException("Couldn't write out alignment to file.",ex);
}
} else {
- StringBody sb = new StringBody(new jalview.io.FormatAdapter().formatSequences(format, alignment, jvsuffix)); // , "text/plain", Charset.forName("UTF-8"));
+ jalview.io.FormatAdapter fa = new jalview.io.FormatAdapter();
+ fa.setNewlineString("\r\n");
+ return new StringBody((fa.formatSequences(format, alignment, jvsuffix)));
+ //,
+ //"text/plain",Charset.forName("UTF-8"));
+ // , "text/plain", Charset.forName("UTF-8"));
// sb.getContentTypeParameters().put("filename", "alignment.fa");
- return sb;
}
}
}
\ No newline at end of file