reversed order of addition of group consensus and conservation
authorjprocter <Jim Procter>
Fri, 21 Aug 2009 11:15:13 +0000 (11:15 +0000)
committerjprocter <Jim Procter>
Fri, 21 Aug 2009 11:15:13 +0000 (11:15 +0000)
src/jalview/gui/AlignmentPanel.java

index 3316227..9c2cbdd 100755 (executable)
@@ -1346,15 +1346,15 @@ public class AlignmentPanel extends GAlignmentPanel implements
       updateCalcs = false;
       sg = (SequenceGroup) gr.elementAt(g);
 
-      if (cons)
+      if (conv)
       {
         updateCalcs = true;
-        av.alignment.addAnnotation(sg.getConsensus(),0);
+        av.alignment.addAnnotation(sg.getConservationRow(),0);
       }
-      if (conv)
+      if (cons)
       {
         updateCalcs = true;
-        av.alignment.addAnnotation(sg.getConservationRow(),0);
+        av.alignment.addAnnotation(sg.getConsensus(),0);
       }
       // refresh the annotation rows
       if (updateCalcs)