Sequence checks for duplicate features
authoramwaterhouse <Andrew Waterhouse>
Wed, 14 Jun 2006 10:16:23 +0000 (10:16 +0000)
committeramwaterhouse <Andrew Waterhouse>
Wed, 14 Jun 2006 10:16:23 +0000 (10:16 +0000)
src/jalview/io/DasSequenceFeatureFetcher.java

index 8f104c5..2fcb027 100755 (executable)
@@ -37,7 +37,6 @@ import org.biojava.services.das.registry.DasSource;
 import jalview.bin.Cache;\r
 \r
 \r
-\r
 /**\r
  * DOCUMENT ME!\r
  *\r
@@ -170,30 +169,17 @@ public class DasSequenceFeatureFetcher implements Runnable
                 Cache.log.debug("das source " + ds.getUrl() + " returned " +\r
                                 features.length + " features");\r
 \r
-\r
                 if (features.length > 0)\r
                 {\r
                   for (int i = 0; i < features.length; i++)\r
                   {\r
-\r
                     SequenceFeature f = newSequenceFeature(features[i],\r
                         source.getNickname());\r
 \r
-                    if (seq.sequenceFeatures != null)\r
-                    {\r
-                      for (int j = 0; (f != null) && j < seq.sequenceFeatures.length;\r
-                           j++)\r
-                      {\r
-                        if (seq.sequenceFeatures[j].equals(f))\r
-                        {\r
-                          f = null;\r
-                        }\r
-                      }\r
-                    }\r
-                    if (f != null)\r
-                    {\r
+                      System.out.println(source.getNickname()+" "+f.getType()+" "+\r
+                                         f.begin+" "+f.end);\r
+\r
                       seq.addSequenceFeature(f);\r
-                    }\r
                   }\r
                 }\r
               }\r
@@ -339,7 +325,6 @@ public class DasSequenceFeatureFetcher implements Runnable
     return null;\r
 \r
   }\r
-\r
 }\r
 \r
 \r