Fix problem with unknown global constants

diff --git a/testsrc/compbio/runner/msa/TcoffeeParametersTester.java b/testsrc/compbio/runner/msa/TcoffeeParametersTester.java
index 4e71adc..70ba1f4 100644 (file)
--- a/testsrc/compbio/runner/msa/TcoffeeParametersTester.java
+++ b/testsrc/compbio/runner/msa/TcoffeeParametersTester.java
@@ -49,6 +49,7 @@ import compbio.metadata.RunnerConfig;
 import compbio.runner.OptionCombinator;\r
 import compbio.runner.msa.Tcoffee;\r
 import compbio.util.Util;\r
+
 \r
 public class TcoffeeParametersTester {\r
 \r
@@ -60,9 +61,9 @@ public class TcoffeeParametersTester {
                log.setLevel(Level.INFO);\r
        }\r
 \r
-       RunnerConfig<Tcoffee> tcoffeeConfig = AllTestSuit.TCOFFEE_PARAMETERS;\r
+       RunnerConfig<Tcoffee> tcoffeeConfig = compbio.runner.Util.getSupportedOptions(Tcoffee.class);\r
        OptionCombinator tcoffeeOpc = null;\r
-       PresetManager<Tcoffee> presets = AllTestSuit.TCOFFEE_PRESETS;\r
+       PresetManager<Tcoffee> presets = compbio.runner.Util.getPresets(Tcoffee.class);\r
 \r
        @BeforeMethod(groups = { AllTestSuit.test_group_runner,\r
                        AllTestSuit.test_group_non_windows })\r