FileParse adapter for reading directly from inputstreams

diff --git a/src/jalview/io/InputStreamParser.java b/src/jalview/io/InputStreamParser.java
new file mode 100644 (file)
index 0000000..19cbad9
--- /dev/null
+++ b/src/jalview/io/InputStreamParser.java
@@ -0,0 +1,54 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ */
+package jalview.io;
+
+import java.io.BufferedReader;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.io.Reader;
+
+public class InputStreamParser extends FileParse
+{
+
+  public InputStreamParser(InputStream is, String dataName)
+          throws IOException
+  {
+    super();
+    setDataName(dataName);
+    dataIn = new BufferedReader(new InputStreamReader(is));
+    error=false;
+  }
+  public InputStreamParser(Reader isreader, String dataName)
+          throws IOException
+  {
+    super();
+    setDataName(dataName);
+    dataIn = new BufferedReader(isreader);
+    error=false;
+  }
+
+
+  @Override
+  protected void finalize() throws Throwable
+  {
+    dataIn = null;
+    super.finalize();
+  }
+
+}