warning note added to consequence

diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index ca5bbb3..1342e93 100755 (executable)
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -295,6 +295,9 @@ public class Conservation
         Hashtable resultHash ;
         Enumeration enumeration;
 
+        //NOTE THIS SHOULD CHECK IF THE CONSEQUENCE ALREADY
+        //EXISTS AND NOT OVERWRITE WITH '-', BUT THIS CASE
+        //DOES NOT EXIST IN JALVIEW 2.1.2
         for(int i=0; i<start; i++)
           consString.append('-');