javadoc

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 938b047..2a91435 100755 (executable)
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -160,7 +160,12 @@ public class AlignFrame
    addKeyListener();
 
   }
-
+  /**
+   * Change the filename and format for the alignment, and
+   * enable the 'reload' button functionality.
+   * @param file valid filename
+   * @param format format of file
+   */
   public void setFileName(String file, String format)
   {
      fileName = file;

diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 3cbd73b..983d02e 100755 (executable)
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -21,7 +21,8 @@ package jalview.io;
 import jalview.datamodel.*;
 
 /**
- * DOCUMENT ME!
+ * Additional formatting methods used by the application
+ * in a number of places. 
  *
  * @author $author$
  * @version $Revision$