Added MuscleWS back in

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index f94ef41..b4fae05 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -97,6 +97,7 @@ public class GAlignFrame extends JInternalFrame
   JMenu sort = new JMenu();
   JMenu calculate = new JMenu();
   JMenuItem preferences = new JMenuItem();
+  JMenuItem msaAlignMenuItem = new JMenuItem();
   public GAlignFrame()
   {
 
@@ -743,6 +744,12 @@ public class GAlignFrame extends JInternalFrame
         preferences_actionPerformed(e);
       }
     });
+    msaAlignMenuItem.setText("Muscle Alignment...");
+    msaAlignMenuItem.addActionListener(new java.awt.event.ActionListener() {
+      public void actionPerformed(ActionEvent e) {
+        msaAlignMenuItem_actionPerformed(e);
+      }
+    });
     alignFrameMenuBar.add(fileMenu);
     alignFrameMenuBar.add(editMenu);
     alignFrameMenuBar.add(searchMenu);
@@ -823,6 +830,7 @@ public class GAlignFrame extends JInternalFrame
     calculateMenu.add(webService);
     webService.add(clustalAlignMenuItem);
     webService.add(jpred);
+    webService.add(msaAlignMenuItem);
     this.getContentPane().add(statusBar, BorderLayout.SOUTH);
     jMenu1.add(pasteNew);
     jMenu1.add(pasteThis);
@@ -1196,4 +1204,8 @@ public class GAlignFrame extends JInternalFrame
 
   }
 
-}
\ No newline at end of file
+  protected void msaAlignMenuItem_actionPerformed(ActionEvent e) {
+
+  }
+
+}