Transparency......

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index 2e193aa..a24525e 100755 (executable)
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -412,10 +412,10 @@ public class FeatureRenderer
   {\r
     void setTransparency(Graphics g, float value)\r
     {\r
-     //Graphics2D g2 = (Graphics2D) g;\r
-    // g2.setComposite(\r
-     //   AlphaComposite.getInstance(\r
-     //        AlphaComposite.SRC_OVER, value));\r
+     Graphics2D g2 = (Graphics2D) g;\r
+     g2.setComposite(\r
+        AlphaComposite.getInstance(\r
+             AlphaComposite.SRC_OVER, value));\r
     }\r
   }\r
 \r