Hashtable size must allow for total-start

diff --git a/src/jalview/analysis/Conservation.java b/src/jalview/analysis/Conservation.java
index 4a93eef..520036e 100755 (executable)
--- a/src/jalview/analysis/Conservation.java
+++ b/src/jalview/analysis/Conservation.java
@@ -145,7 +145,7 @@ public class Conservation {
 \r
       if (percentageGaps > pgaps)\r
       {\r
-        Hashtable resultHash = (Hashtable)total.elementAt(i);\r
+        Hashtable resultHash = (Hashtable)total.elementAt(i-start);\r
 \r
         //Now find the verdict\r
         int         count = 0;\r