From: Jim Procter Date: Fri, 30 Aug 2013 14:53:59 +0000 (+0100) Subject: JWS-71 - nominal Limits for RNAFold service - necessary so 'drmaa X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=16ac5f3ad57574a37aa7e013813c4f0b33b87508;p=jabaws.git JWS-71 - nominal Limits for RNAFold service - necessary so 'drmaa library not found' exception isn't raised when submitting to cluster --- diff --git a/conf/Executable.properties b/conf/Executable.properties index ba9b4a7..28b9f66 100644 --- a/conf/Executable.properties +++ b/conf/Executable.properties @@ -199,5 +199,9 @@ aacon.presets.file=conf/settings/AAConPresets.xml ##### RNAALIFOLD CONFIGURATION ###### local.rnaalifold.bin.windows=binaries/windows/ViennaRNA/RNAalifold.exe local.rnaalifold.bin=binaries/src/ViennaRNA/Progs/RNAalifold +#cluster.rnaalifold.bin=/homes/www-jws2/test-servers/tomcat7-jaba3/webapps/jabawsRNA/binaries/src/ViennaRNA/Progs/RNAalifold rnaalifold.parameters.file=conf/settings/RNAalifoldOptionsOnly.xml +rnaalifold.limits.file=conf/settings/RNAalifoldLimits.xml +rnaalifold.cluster.settings=-P webservices -R y -l h_cpu=24:00:00 -l ram=6000M + diff --git a/conf/settings/RNAalifoldLimits.xml b/conf/settings/RNAalifoldLimits.xml new file mode 100644 index 0000000..381962e --- /dev/null +++ b/conf/settings/RNAalifoldLimits.xml @@ -0,0 +1,13 @@ + + + compbio.runner.structure.RNAaliFold + + 1000 + 1000 + + + # LocalEngineExecutionLimit # + 100 + 200 + +