From: kiramt <k.mourao@dundee.ac.uk>
Date: Thu, 9 Nov 2017 20:05:31 +0000 (+0000)
Subject: JAL-2827 Fix notched repaint of helix annotation when scrolling
X-Git-Tag: Release_2_10_3b1~5^2~6^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=9a2ab4782fb521cbad830ef556431cf9009a0994;p=jalview.git

JAL-2827 Fix notched repaint of helix annotation when scrolling
---

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index 41772d4..683ca78 100644
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -1147,7 +1147,8 @@ public class AnnotationRenderer
   {
     g.setColor(HELIX_COLOUR);
 
-    int sCol = (lastSSX / charWidth) + startRes;
+    int sCol = (lastSSX / charWidth)
+            + hiddenColumns.adjustForHiddenColumns(startRes);
     int x1 = lastSSX;
     int x2 = (x * charWidth);