From: Ben Soares <bsoares@dundee.ac.uk>
Date: Wed, 4 Mar 2020 11:02:18 +0000 (+0000)
Subject: JAL-3468 improvement to feature description truncation when <a> links in text
X-Git-Tag: Develop-2_11_2_0-d20201215~58^2~7^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=a1672fb7a56762c9b138f76cdddfe750573db1af;p=jalview.git

JAL-3468 improvement to feature description truncation when <a> links in text
---

diff --git a/src/jalview/io/SequenceAnnotationReport.java b/src/jalview/io/SequenceAnnotationReport.java
index 1bbc338..3624cd9 100644
--- a/src/jalview/io/SequenceAnnotationReport.java
+++ b/src/jalview/io/SequenceAnnotationReport.java
@@ -242,7 +242,9 @@ public class SequenceAnnotationReport
          * truncate overlong descriptions unless they contain an href
          * (as truncation could leave corrupted html)
          */
-        boolean hasLink = description.indexOf("a href") > -1;
+        int linkindex = description.toLowerCase().indexOf("<a ");
+        boolean hasLink = linkindex > -1
+                && linkindex < (MAX_DESCRIPTION_LENGTH);
         if (description.length() > MAX_DESCRIPTION_LENGTH && !hasLink)
         {
           description = description.substring(0, MAX_DESCRIPTION_LENGTH)