From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 1 May 2014 14:26:07 +0000 (+0100)
Subject: JAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on colourscheme indicating conserva... 
X-Git-Tag: Jalview_2_9~190^2~11
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;ds=sidebyside;h=bbe6ffa0b958ee6c56bf485a120380845fb795c2;p=jalview.git

JAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on colourscheme indicating conservation shading should be applied
---

diff --git a/src/jalview/schemes/ColourSchemeI.java b/src/jalview/schemes/ColourSchemeI.java
index 65c24c1..3f73fc9 100755
--- a/src/jalview/schemes/ColourSchemeI.java
+++ b/src/jalview/schemes/ColourSchemeI.java
@@ -57,6 +57,11 @@ public interface ColourSchemeI
   public void setConservation(jalview.analysis.Conservation c);
 
   /**
+   * enable or disable conservation shading for this colourscheme
+   * @param conservationApplied 
+   */
+  public void setConservationApplied(boolean conservationApplied);
+  /**
    * 
    * @return true if conservation shading is enabled for this colourscheme
    */
diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java
index 943d2fa..424947c 100755
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -194,6 +194,11 @@ public class ResidueColourScheme implements ColourSchemeI
   {
     return conservationColouring;
   }
+  @Override
+  public void setConservationApplied(boolean conservationApplied)
+  {
+    conservationColouring = conservationApplied;
+  }
 
   public void setConservationInc(int i)
   {