From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 5 Dec 2005 13:38:08 +0000 (+0000)
Subject: not needed
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=33d1fbb637197304cd9eafaf5dc8bd5c8b003eb6;p=jalview.git

not needed
---

diff --git a/src/jalview/binding/JalviewModelSequence2.java b/src/jalview/binding/JalviewModelSequence2.java
deleted file mode 100755
index 2cfd72c..0000000
--- a/src/jalview/binding/JalviewModelSequence2.java
+++ /dev/null
@@ -1,319 +0,0 @@
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
- * Schema.
- * $Id$
- */
-package jalview.binding;
-
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-
-import org.xml.sax.ContentHandler;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-
-import java.util.Enumeration;
-import java.util.Vector;
-
-
-/**
- * Class JalviewModelSequence2.
- *
- * @version $Revision$ $Date$
- */
-public class JalviewModelSequence2 implements java.io.Serializable
-{
-    //--------------------------/
-    //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _items
-     */
-    private java.util.Vector _items;
-
-    //----------------/
-    //- Constructors -/
-    //----------------/
-    public JalviewModelSequence2()
-    {
-        super();
-        _items = new Vector();
-    }
-
-    //-- jalview.binding.JalviewModelSequence2()
-    //-----------/
-
-    /**
-     * DOCUMENT ME!
-     *
-     * @param vJalviewModelSequence2Item DOCUMENT ME!
-     *
-     * @throws java.lang.IndexOutOfBoundsException DOCUMENT ME!
-     */
-    public void addJalviewModelSequence2Item(
-        jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        _items.addElement(vJalviewModelSequence2Item);
-    }
-
-    //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
-
-    /**
-     * Method addJalviewModelSequence2Item
-     *
-     *
-     *
-     * @param index
-     * @param vJalviewModelSequence2Item
-     */
-    public void addJalviewModelSequence2Item(int index,
-        jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        _items.insertElementAt(vJalviewModelSequence2Item, index);
-    }
-
-    //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
-
-    /**
-     * Method enumerateJalviewModelSequence2Item
-     *
-     *
-     *
-     * @return Enumeration
-     */
-    public java.util.Enumeration enumerateJalviewModelSequence2Item()
-    {
-        return _items.elements();
-    }
-
-    //-- java.util.Enumeration enumerateJalviewModelSequence2Item() 
-
-    /**
-     * Method getJalviewModelSequence2Item
-     *
-     *
-     *
-     * @param index
-     * @return JalviewModelSequence2Item
-     */
-    public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(
-        int index) throws java.lang.IndexOutOfBoundsException
-    {
-        //-- check bounds for index
-        if ((index < 0) || (index > _items.size()))
-        {
-            throw new IndexOutOfBoundsException();
-        }
-
-        return (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
-    }
-
-    //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int) 
-
-    /**
-     * Method getJalviewModelSequence2Item
-     *
-     *
-     *
-     * @return JalviewModelSequence2Item
-     */
-    public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()
-    {
-        int size = _items.size();
-        jalview.binding.JalviewModelSequence2Item[] mArray = new jalview.binding.JalviewModelSequence2Item[size];
-
-        for (int index = 0; index < size; index++)
-        {
-            mArray[index] = (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);
-        }
-
-        return mArray;
-    }
-
-    //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() 
-
-    /**
-     * Method getJalviewModelSequence2ItemCount
-     *
-     *
-     *
-     * @return int
-     */
-    public int getJalviewModelSequence2ItemCount()
-    {
-        return _items.size();
-    }
-
-    //-- int getJalviewModelSequence2ItemCount() 
-
-    /**
-     * Method isValid
-     *
-     *
-     *
-     * @return boolean
-     */
-    public boolean isValid()
-    {
-        try
-        {
-            validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex)
-        {
-            return false;
-        }
-
-        return true;
-    }
-
-    //-- boolean isValid() 
-
-    /**
-     * Method marshal
-     *
-     *
-     *
-     * @param out
-     */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, 
-            org.exolab.castor.xml.ValidationException
-    {
-        Marshaller.marshal(this, out);
-    }
-
-    //-- void marshal(java.io.Writer) 
-
-    /**
-     * Method marshal
-     *
-     *
-     *
-     * @param handler
-     */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, 
-            org.exolab.castor.xml.ValidationException
-    {
-        Marshaller.marshal(this, handler);
-    }
-
-    //-- void marshal(org.xml.sax.ContentHandler) 
-
-    /**
-     * Method removeAllJalviewModelSequence2Item
-     *
-     */
-    public void removeAllJalviewModelSequence2Item()
-    {
-        _items.removeAllElements();
-    }
-
-    //-- void removeAllJalviewModelSequence2Item() 
-
-    /**
-     * Method removeJalviewModelSequence2Item
-     *
-     *
-     *
-     * @param index
-     * @return JalviewModelSequence2Item
-     */
-    public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(
-        int index)
-    {
-        java.lang.Object obj = _items.elementAt(index);
-        _items.removeElementAt(index);
-
-        return (jalview.binding.JalviewModelSequence2Item) obj;
-    }
-
-    //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int) 
-
-    /**
-     * Method setJalviewModelSequence2Item
-     *
-     *
-     *
-     * @param index
-     * @param vJalviewModelSequence2Item
-     */
-    public void setJalviewModelSequence2Item(int index,
-        jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)
-        throws java.lang.IndexOutOfBoundsException
-    {
-        //-- check bounds for index
-        if ((index < 0) || (index > _items.size()))
-        {
-            throw new IndexOutOfBoundsException();
-        }
-
-        _items.setElementAt(vJalviewModelSequence2Item, index);
-    }
-
-    //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) 
-
-    /**
-     * Method setJalviewModelSequence2Item
-     *
-     *
-     *
-     * @param jalviewModelSequence2ItemArray
-     */
-    public void setJalviewModelSequence2Item(
-        jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray)
-    {
-        //-- copy array
-        _items.removeAllElements();
-
-        for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++)
-        {
-            _items.addElement(jalviewModelSequence2ItemArray[i]);
-        }
-    }
-
-    //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) 
-
-    /**
-     * Method unmarshal
-     *
-     *
-     *
-     * @param reader
-     * @return Object
-     */
-    public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, 
-            org.exolab.castor.xml.ValidationException
-    {
-        return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class,
-            reader);
-    }
-
-    //-- java.lang.Object unmarshal(java.io.Reader) 
-
-    /**
-     * Method validate
-     *
-     */
-    public void validate() throws org.exolab.castor.xml.ValidationException
-    {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    }
-
-    //-- void validate() 
-}
diff --git a/src/jalview/binding/JalviewModelSequence2Item.java b/src/jalview/binding/JalviewModelSequence2Item.java
deleted file mode 100755
index 6e54565..0000000
--- a/src/jalview/binding/JalviewModelSequence2Item.java
+++ /dev/null
@@ -1,206 +0,0 @@
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.binding;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import java.util.*;
-
-/**
- * Class JalviewModelSequence2Item.
- *
- * @version $Revision$ $Date$
- */
-public class JalviewModelSequence2Item
-    implements java.io.Serializable
-{
-
-  //--------------------------/
-  //- Class/Member Variables -/
-  //--------------------------/
-
-  /**
-   * Field _userColourSchemeList
-   */
-  private java.util.Vector _userColourSchemeList;
-
-  //----------------/
-  //- Constructors -/
-  //----------------/
-
-  public JalviewModelSequence2Item()
-  {
-    super();
-    _userColourSchemeList = new Vector();
-  } //-- jalview.binding.JalviewModelSequence2Item()
-
-  //-----------/
-  //- Methods -/
-  //-----------/
-
-  /**
-   * Method addUserColourScheme
-   *
-   *
-   *
-   * @param vUserColourScheme
-   */
-  public void addUserColourScheme(jalview.binding.UserColourScheme
-                                  vUserColourScheme)
-      throws java.lang.IndexOutOfBoundsException
-  {
-    _userColourSchemeList.addElement(vUserColourScheme);
-  } //-- void addUserColourScheme(jalview.binding.UserColourScheme)
-
-  /**
-   * Method addUserColourScheme
-   *
-   *
-   *
-   * @param index
-   * @param vUserColourScheme
-   */
-  public void addUserColourScheme(int index,
-                                  jalview.binding.UserColourScheme
-                                  vUserColourScheme)
-      throws java.lang.IndexOutOfBoundsException
-  {
-    _userColourSchemeList.insertElementAt(vUserColourScheme, index);
-  } //-- void addUserColourScheme(int, jalview.binding.UserColourScheme)
-
-  /**
-   * Method enumerateUserColourScheme
-   *
-   *
-   *
-   * @return Enumeration
-   */
-  public java.util.Enumeration enumerateUserColourScheme()
-  {
-    return _userColourSchemeList.elements();
-  } //-- java.util.Enumeration enumerateUserColourScheme()
-
-  /**
-   * Method getUserColourScheme
-   *
-   *
-   *
-   * @param index
-   * @return UserColourScheme
-   */
-  public jalview.binding.UserColourScheme getUserColourScheme(int index)
-      throws java.lang.IndexOutOfBoundsException
-  {
-    //-- check bounds for index
-    if ( (index < 0) || (index > _userColourSchemeList.size()))
-    {
-      throw new IndexOutOfBoundsException();
-    }
-
-    return (jalview.binding.UserColourScheme) _userColourSchemeList.elementAt(
-        index);
-  } //-- jalview.binding.UserColourScheme getUserColourScheme(int)
-
-  /**
-   * Method getUserColourScheme
-   *
-   *
-   *
-   * @return UserColourScheme
-   */
-  public jalview.binding.UserColourScheme[] getUserColourScheme()
-  {
-    int size = _userColourSchemeList.size();
-    jalview.binding.UserColourScheme[] mArray = new jalview.binding.
-        UserColourScheme[size];
-    for (int index = 0; index < size; index++)
-    {
-      mArray[index] = (jalview.binding.UserColourScheme) _userColourSchemeList.
-          elementAt(index);
-    }
-    return mArray;
-  } //-- jalview.binding.UserColourScheme[] getUserColourScheme()
-
-  /**
-   * Method getUserColourSchemeCount
-   *
-   *
-   *
-   * @return int
-   */
-  public int getUserColourSchemeCount()
-  {
-    return _userColourSchemeList.size();
-  } //-- int getUserColourSchemeCount()
-
-  /**
-   * Method removeAllUserColourScheme
-   *
-   */
-  public void removeAllUserColourScheme()
-  {
-    _userColourSchemeList.removeAllElements();
-  } //-- void removeAllUserColourScheme()
-
-  /**
-   * Method removeUserColourScheme
-   *
-   *
-   *
-   * @param index
-   * @return UserColourScheme
-   */
-  public jalview.binding.UserColourScheme removeUserColourScheme(int index)
-  {
-    java.lang.Object obj = _userColourSchemeList.elementAt(index);
-    _userColourSchemeList.removeElementAt(index);
-    return (jalview.binding.UserColourScheme) obj;
-  } //-- jalview.binding.UserColourScheme removeUserColourScheme(int)
-
-  /**
-   * Method setUserColourScheme
-   *
-   *
-   *
-   * @param index
-   * @param vUserColourScheme
-   */
-  public void setUserColourScheme(int index,
-                                  jalview.binding.UserColourScheme
-                                  vUserColourScheme)
-      throws java.lang.IndexOutOfBoundsException
-  {
-    //-- check bounds for index
-    if ( (index < 0) || (index > _userColourSchemeList.size()))
-    {
-      throw new IndexOutOfBoundsException();
-    }
-    _userColourSchemeList.setElementAt(vUserColourScheme, index);
-  } //-- void setUserColourScheme(int, jalview.binding.UserColourScheme)
-
-  /**
-   * Method setUserColourScheme
-   *
-   *
-   *
-   * @param userColourSchemeArray
-   */
-  public void setUserColourScheme(jalview.binding.UserColourScheme[]
-                                  userColourSchemeArray)
-  {
-    //-- copy array
-    _userColourSchemeList.removeAllElements();
-    for (int i = 0; i < userColourSchemeArray.length; i++)
-    {
-      _userColourSchemeList.addElement(userColourSchemeArray[i]);
-    }
-  } //-- void setUserColourScheme(jalview.binding.UserColourScheme)
-
-}