From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 21 Dec 2006 13:49:44 +0000 (+0000)
Subject: getSequenceAsString
X-Git-Tag: Release_2_3~497
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=447cc635623ba2c4c6b1ac9dbb32d660d3172f96;p=jalview.git

getSequenceAsString
---

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index 760123b..7363e9e 100644
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -578,7 +578,7 @@ public class SeqCigar
         System.out.println("" + al.getSequenceAt(i).getName() + "\t" +
                            al.getSequenceAt(i).getStart() + "\t" +
                            al.getSequenceAt(i).getEnd() + "\t" +
-                           al.getSequenceAt(i).getSequence());
+                           al.getSequenceAt(i).getSequenceAsString());
       }
     }
     {