From: jprocter Date: Fri, 5 Dec 2008 13:19:00 +0000 (+0000) Subject: added location of menu option and keystroke X-Git-Tag: Release_2_5~385 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=5e1efef040594dbf9b5364b523bd62c2f977cb50;p=jalview.git added location of menu option and keystroke --- diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 1f3d464..4b42238 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,11 +1,16 @@ - -Removing Redundancy - -

Removing redundancy

-

Selecting this option brings up a window asking you to select a threshold. - If the percentage identity between two sequences exceeds this value one of the - sequences (the shorter) is discarded. The redundancy calculation is done when - the Apply button is pressed. For large numbers of sequences this can take a - long time as all pairs have to be compared.

- - + + +Removing Redundancy + + +

Removing redundancy

+

Selecting the option in the Alignment window's Edit +menu or pressing 'CONTROL+D' brings up a dialog box +asking you to select a threshold. If the percentage identity between the +aligned positions of any two sequences in the visible alignment exceeds +this value, the shorter sequence is discarded.
Note: The redundancy +calculation is done when the dialog box is opened. For large numbers +of sequences this can take a long time as all pairs have to be compared. +

+ +