From: Jim Procter <jprocter@dundee.ac.uk>
Date: Thu, 19 Feb 2015 15:20:51 +0000 (+0000)
Subject: JAL-653 set the warningMessage for the file source to allow the GUI to report problem... 
X-Git-Tag: Release_2_10_0~296^2~162
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=78d748602388587364a0070debaaa8984d292b17;hp=b005d2429ec2b467aaf18318336842dc4c292b76;p=jalview.git

JAL-653 set the warningMessage for the file source to allow the GUI to report problems if necessary.
---

diff --git a/src/jalview/io/FeaturesFile.java b/src/jalview/io/FeaturesFile.java
index baf9b82..88a8611 100755
--- a/src/jalview/io/FeaturesFile.java
+++ b/src/jalview/io/FeaturesFile.java
@@ -635,6 +635,9 @@ public class FeaturesFile extends AlignFile
       resetMatcher();
     } catch (Exception ex)
     {
+      // should report somewhere useful for UI if necessary
+      warningMessage = ((warningMessage == null) ? "" : warningMessage)
+              + "Parsing error at\n" + line;
       System.out.println("Error parsing feature file: " + ex + "\n" + line);
       ex.printStackTrace(System.err);
       resetMatcher();