From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 2 Jul 2018 16:36:28 +0000 (+0100)
Subject: JAL-3048 File->VCF load refactored
X-Git-Tag: Develop-2_11_2_0-d20201215~24^2~68^2~603^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=85a10a2e77527a6c763fd52e3175c8158785cbca;hp=95895d6f4c575d2af751bc46c172277ca0de1d31;p=jalview.git

JAL-3048 File->VCF load refactored
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index e45dc5d..e4a3f8c 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5642,22 +5642,27 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   @Override
   protected void loadVcf_actionPerformed()
   {
-    // TODO: JAL-3048 - No VCF support in JsJalview
     JalviewFileChooser chooser = new JalviewFileChooser(
             Cache.getProperty("LAST_DIRECTORY"));
     chooser.setFileView(new JalviewFileView());
     chooser.setDialogTitle(MessageManager.getString("label.load_vcf_file"));
     chooser.setToolTipText(MessageManager.getString("label.load_vcf_file"));
+    final AlignFrame us = this;
+    chooser.response(new RunResponse(JalviewFileChooser.APPROVE_OPTION)
+    {
+      @Override
+      public void run()
+      {
 
-    int value = chooser.showOpenDialog(null);
+        {
+          String choice = chooser.getSelectedFile().getPath();
+          Cache.setProperty("LAST_DIRECTORY", choice);
+          SequenceI[] seqs = viewport.getAlignment().getSequencesArray();
+          new VCFLoader(choice).loadVCF(seqs, us);
+        }
 
-    if (value == JalviewFileChooser.APPROVE_OPTION)
-    {
-      String choice = chooser.getSelectedFile().getPath();
-      Cache.setProperty("LAST_DIRECTORY", choice);
-      SequenceI[] seqs = viewport.getAlignment().getSequencesArray();
-      new VCFLoader(choice).loadVCF(seqs, this);
-    }
+      };
+    }).openDialog(null);
 
   }