From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 25 Jan 2007 16:02:21 +0000 (+0000)
Subject: load/get Annotation
X-Git-Tag: Release_2_3~441
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9730ab23fa7a61eaede121471fdae48a5eea7dba;p=jalview.git

load/get Annotation
---

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index ef7f582..de9a4a7 100755
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -43,6 +43,7 @@ public class JalviewLite extends Applet
   ///////////////////////////////////////////
   //The following public methods maybe called
   //externally, eg via javascript in HTML page
+
   public String getSelectedSequences()
     {
       StringBuffer result = new StringBuffer("");
@@ -82,11 +83,31 @@ public class JalviewLite extends Applet
       }
     }
 
+    public void loadAnnotation(String annotation)
+    {
+      if (new AnnotationFile().readAnnotationFile(
+          currentAlignFrame.getAlignViewport().getAlignment(), annotation,
+          AppletFormatAdapter.PASTE))
+      {
+        currentAlignFrame.alignPanel.fontChanged();
+        currentAlignFrame.alignPanel.setScrollValues(0, 0);
+      }
+      else
+      {
+        currentAlignFrame.parseFeaturesFile(annotation, AppletFormatAdapter.PASTE);
+      }
+    }
+
     public String getFeatures(String format)
     {
       return currentAlignFrame.outputFeatures(false, format);
     }
 
+    public String getAnnotation()
+    {
+      return currentAlignFrame.outputAnnotations(false);
+    }
+
     public void loadAlignment(String text, String title)
     {
         Alignment al = null;
@@ -103,11 +124,11 @@ public class JalviewLite extends Applet
         }
    }
 
-
     ////////////////////////////////////////////////
     ////////////////////////////////////////////////
 
 
+
     static int lastFrameX = 200;
     static int lastFrameY = 200;
     boolean fileFound = true;