From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Wed, 5 Oct 2016 10:23:53 +0000 (+0100)
Subject: JAL-1191 added mRNA isA transcript to SequenceOntologyLite (because
X-Git-Tag: Release_2_10_0~18
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=9e5253dce9d7547e3191d596ed10f73e4af0cc1d;hp=e6da5ba1eb998e5d3b21f13fa6d8e45f15e5f878;p=jalview.git

JAL-1191 added mRNA isA transcript to SequenceOntologyLite (because
Ensembl now returning coding features as mRNA not transcript!)
---

diff --git a/src/jalview/io/gff/SequenceOntologyLite.java b/src/jalview/io/gff/SequenceOntologyLite.java
index b3f8161..2c972ad 100644
--- a/src/jalview/io/gff/SequenceOntologyLite.java
+++ b/src/jalview/io/gff/SequenceOntologyLite.java
@@ -51,6 +51,7 @@ public class SequenceOntologyLite implements SequenceOntologyI
     { "miRNA", "transcript" },
     { "lincRNA", "transcript" },
     { "rRNA", "transcript" },
+    { "mRNA", "transcript" },
     // there are many more sub-types of ncRNA...
     
     /*