From: James Procter Date: Fri, 29 Sep 2023 11:59:53 +0000 (+0100) Subject: JAL-4090 fix url to new cli docs X-Git-Tag: Release_2_11_3_0~6^2~14 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=b3e95cc3926094b62fb3c64a469cf7ccf6c1249b;hp=6444e0413859ac9197c9bc493dc45e1f88de2c48;p=jalview.git JAL-4090 fix url to new cli docs --- diff --git a/help/markdown/whatsnew/whatsnew-2_11_3_0.md b/help/markdown/whatsnew/whatsnew-2_11_3_0.md index dbafc08..cf91e3a 100644 --- a/help/markdown/whatsnew/whatsnew-2_11_3_0.md +++ b/help/markdown/whatsnew/whatsnew-2_11_3_0.md @@ -17,7 +17,7 @@ Jalview 2's original command line interface (CLI) allowed alignments to be impor * 3D structure data shown in Jmol can be exported as PNG * Scale factors and dimensions can be specified, allowing high resolution image exports -In addition to these new functionality, next generation CLI operations can be applied to a range of files and directories through the use of wild-cards. This allows faster and more efficient processing of large numbers of alignments. It also facilitates modularisation of operations through the use of ['command-line argument files'](../features/clarguments-argfiles.html). +In addition to these new functionality, next generation CLI operations can be applied to a range of files and directories through the use of wild-cards. This allows faster and more efficient processing of large numbers of alignments. It also facilitates modularisation of operations through the use of ['command-line argument files'](features/clarguments-argfiles.html). All new CLI parameters are preceded by '--', as opposed to an optional single '-' which was used in Jalview's old CLI. Old style arguments can still be used, so existing scripts will still work as before, but old-style operations cannot be mixed with new operations in the same CLI call. Use of old command line operations will also raise a warning, and we plan to completely remove support in Jalview's next major release (2.12).