From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 27 Apr 2017 16:48:30 +0000 (+0100)
Subject: JAL-1933 desktop documentation for show occupancy preference
X-Git-Tag: Release_2_10_2~3^2~119^2~3
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=e83dbeade67a44205374ebc31fa1822bcce23702;hp=a31abdd471cb1d047371df919a4512c5617e3c25;p=jalview.git

JAL-1933 desktop documentation for show occupancy preference
---

diff --git a/help/html/features/preferences.html b/help/html/features/preferences.html
index da045ba..6e8d3e4 100755
--- a/help/html/features/preferences.html
+++ b/help/html/features/preferences.html
@@ -89,10 +89,11 @@
   <p>
     <em>Show Annotations</em> - If this is selected the new window will
     display an annotation panel below the sequences. This annotation
-    panel may have several rows describing the whole alignment. The 3
-    standard annotations <em>Conservation</em>, <em>Quality</em> and <em>Consensus</em>
-    for the alignment may be shown or hidden by default using the
-    checkboxes below.
+    panel may have several rows describing the whole alignment. The 4
+    standard annotations <em>Conservation</em>, <em>Quality</em>, 
+    <em>Occupancy</em> and <em>Consensus</em> for the alignment may 
+    be shown or hidden by default using the checkboxes adjacent and
+    below.
   </p>
   <p>
     <em>Show group: Conservation and Consensus</em> controls the display