source.jalview.org Git - vamsas.git/log

jprocter [Fri, 20 Jan 2006 12:00:23 +0000 (12:00 +0000)]

added overwrite flag to VamsasArchive writer class (avoids loss of locks on file deletion)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@154 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 20 Jan 2006 11:05:28 +0000 (11:05 +0000)]

VamsasArchive tested. Locked IO routines to be implemented in ArchiveFile

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@153 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 20 Jan 2006 09:57:33 +0000 (09:57 +0000)]

removed after schema modification,

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@152 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 20 Jan 2006 08:50:30 +0000 (08:50 +0000)]

more locked IO performance tests.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@151 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 18:17:31 +0000 (18:17 +0000)]

introduced locked IO testing for Archive IO

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@150 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 18:17:04 +0000 (18:17 +0000)]

started on ClientDocument implementation and Locked IO tests for VamsasArchive

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@149 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 18:15:51 +0000 (18:15 +0000)]

added skeleton class for vorbaId methods and comments

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@148 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 13:32:33 +0000 (13:32 +0000)]

todo

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@147 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 12:12:42 +0000 (12:12 +0000)]

moved IClientDocument implementation into the simpleclient package.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@146 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 12:12:04 +0000 (12:12 +0000)]

set correct get/Set VamsasRoots type, added addVamsasRoot, and some more TODOs

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@145 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 11:51:36 +0000 (11:51 +0000)]

generalised ArchiveReports functions to output on any stream.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@144 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 19 Jan 2006 11:31:56 +0000 (11:31 +0000)]

comments - explanation of bad heuristic that has to be fixed.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@143 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 17 Jan 2006 16:41:34 +0000 (16:41 +0000)]

added and tested simple document handling and update with test.ArchiveWriter.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@142 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 17 Jan 2006 12:17:30 +0000 (12:17 +0000)]

debugged VamsasArchive and rationalised debugging messages.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@141 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 17 Jan 2006 10:37:39 +0000 (10:37 +0000)]

fixed the User element and the form of the ApplicationData dataType.xsd definition.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@140 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 16 Jan 2006 20:25:49 +0000 (20:25 +0000)]

found cyclic dependency problems in schema and in VorbaId mechanism.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@139 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 16 Jan 2006 20:05:03 +0000 (20:05 +0000)]

minimally debugged idFactory and vorbaId mechanism. Inelegant!

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@138 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 16 Jan 2006 11:19:16 +0000 (11:19 +0000)]

typo

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@137 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 16 Jan 2006 10:25:52 +0000 (10:25 +0000)]

changed textual references for Class.class initializer for commons-logger

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@136 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 16 Jan 2006 10:14:00 +0000 (10:14 +0000)]

refactored - Vorba object binding machinery and interfaces live in org.vamsas.client, specific clients now live in their own package.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@135 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 16 Jan 2006 09:37:30 +0000 (09:37 +0000)]

debug as far as test marshalling - a vorbaIdFactory is now required.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@134 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Sun, 15 Jan 2006 17:58:35 +0000 (17:58 +0000)]

debugging.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@133 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Sun, 15 Jan 2006 17:58:15 +0000 (17:58 +0000)]

debugging.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@132 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Sun, 15 Jan 2006 16:04:22 +0000 (16:04 +0000)]

minimal log.info output for commons-logging (commented out the specific org.vamsas logger so root logger takes precedence only)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@131 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Sun, 15 Jan 2006 13:18:21 +0000 (13:18 +0000)]

more verbose reports and demo VamsasDocument testing

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@130 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Sun, 15 Jan 2006 13:17:45 +0000 (13:17 +0000)]

Controlled versionString vocabulary, newVamsasDocument construction methods and newAlignmentSequence methods

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@129 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 18:21:29 +0000 (18:21 +0000)]

save on nasty svn conflicts.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@128 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 18:14:40 +0000 (18:14 +0000)]

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@127 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 18:14:04 +0000 (18:14 +0000)]

where packaged build will go

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@126 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 18:13:30 +0000 (18:13 +0000)]

eclipse builder

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@125 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 17:36:29 +0000 (17:36 +0000)]

refactored and incorporated basic io routines from vamsas web services stack.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@124 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 16:35:54 +0000 (16:35 +0000)]

imported from the old vamsas webservices datatypes and adapted for new

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@123 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 16:35:09 +0000 (16:35 +0000)]

basic class defining symbol dictionaries

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@122 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 16:09:34 +0000 (16:09 +0000)]

more plus added VAMAS: tag for a policy decision

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@121 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 16:05:24 +0000 (16:05 +0000)]

added command line definition

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@120 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:52:34 +0000 (15:52 +0000)]

comments

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@119 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:50:56 +0000 (15:50 +0000)]

trivial

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@118 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:33:21 +0000 (15:33 +0000)]

trivial doc

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@117 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:26:52 +0000 (15:26 +0000)]

package for testing the core objects and their helper classes

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@116 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:24:25 +0000 (15:24 +0000)]

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@115 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:23:24 +0000 (15:23 +0000)]

some test data

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@114 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:10:15 +0000 (15:10 +0000)]

simple VamsasArchive testing class.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@113 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:05:08 +0000 (15:05 +0000)]

schema update

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@112 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 15:04:06 +0000 (15:04 +0000)]

methods for making and accessing objects in org.vamsa.objects.core

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@111 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 14:53:54 +0000 (14:53 +0000)]

added getOriginalRoots() method for current archive.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@110 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 14:53:22 +0000 (14:53 +0000)]

synchronizing commit

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@109 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 14:06:39 +0000 (14:06 +0000)]

refactored standard static 'ArchiveReports' into their own class.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@108 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 14:06:10 +0000 (14:06 +0000)]

extracted serial command processing for use by other test classes

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@107 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 12:37:21 +0000 (12:37 +0000)]

synchronized AppData parsing stuff with new AppData entry (embedded/references)
- this is untested at the mo.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@106 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 12:36:40 +0000 (12:36 +0000)]

added a couple of TODO: entries.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@105 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 13 Jan 2006 12:34:03 +0000 (12:34 +0000)]

partially implemented ArchiveWriter test class (routines will form basis of Get/Set clientDocument stuff)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@104 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 30 Nov 2005 18:06:50 +0000 (18:06 +0000)]

added OriginalArchiveReader access method and helper method for updating archives.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@103 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 30 Nov 2005 18:06:04 +0000 (18:06 +0000)]

wrapper class to prevent client from closing JarOutputStream when it closes the AppData writing stream.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@102 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 30 Nov 2005 14:44:54 +0000 (14:44 +0000)]

Switched xs:base64encoded and xs:String for type of AppData and AppDataReference.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@101 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 29 Nov 2005 16:33:04 +0000 (16:33 +0000)]

probably deprecating this class.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@100 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 29 Nov 2005 16:21:37 +0000 (16:21 +0000)]

small updates.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@99 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 29 Nov 2005 14:20:41 +0000 (14:20 +0000)]

untested vamsasArchive class with additional method for transferring data between session files.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@98 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 23 Nov 2005 15:35:22 +0000 (15:35 +0000)]

basic logging configs.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@97 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 23 Nov 2005 15:34:21 +0000 (15:34 +0000)]

using commons-logging for hierarchial control of logger.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@96 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 23 Nov 2005 15:23:01 +0000 (15:23 +0000)]

use SessionFile constructor and added todo about java.nio file locking.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@95 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 21 Nov 2005 17:49:19 +0000 (17:49 +0000)]

reorganising vamsasArchive (write to temp file, rather than write to original filename)
Added File constructor for sessionFile for convenience.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@94 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 11 Nov 2005 18:12:50 +0000 (18:12 +0000)]

lost from new schema

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@93 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 11 Nov 2005 18:07:39 +0000 (18:07 +0000)]

basics of arhiveWriter

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@92 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 11 Nov 2005 18:05:29 +0000 (18:05 +0000)]

access for vamsas.xml style vamsas archive

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@91 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 11 Nov 2005 18:03:57 +0000 (18:03 +0000)]

extended report of archive contents.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@90 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 10 Nov 2005 11:23:30 +0000 (11:23 +0000)]

synchronized with last schema revision.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@89 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 10 Nov 2005 11:22:12 +0000 (11:22 +0000)]

synchronized with last schema revision.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@88 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 3 Nov 2005 14:10:01 +0000 (14:10 +0000)]

Vamsas Archive Reader and simple test class.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@87 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

amwaterhouse [Thu, 3 Nov 2005 11:12:28 +0000 (11:12 +0000)]

Application data has choice of data or dataRef

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@86 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 2 Nov 2005 16:11:46 +0000 (16:11 +0000)]

refactored common locked IO methods from ClientsFile to SessionFile

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@85 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 2 Nov 2005 15:31:53 +0000 (15:31 +0000)]

doc comment about lock holding across session client processes.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@84 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 2 Nov 2005 15:21:39 +0000 (15:21 +0000)]

propagate changes from schema update.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@83 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 1 Nov 2005 17:42:25 +0000 (17:42 +0000)]

creates and holds all the watcher/io objects for a session.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@82 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 1 Nov 2005 17:41:36 +0000 (17:41 +0000)]

partially updated comments (and repurposing of class).

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@81 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 28 Oct 2005 16:03:13 +0000 (16:03 +0000)]

refactored documentHandler to VamsasFile to indicate similarity with ClientFile handler class.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@80 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

amwaterhouse [Fri, 28 Oct 2005 12:50:10 +0000 (12:50 +0000)]

DatasetAnnotations begin and end set as integers

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@79 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 27 Oct 2005 17:03:51 +0000 (17:03 +0000)]

javadoc typo

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@78 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 25 Oct 2005 13:28:45 +0000 (13:28 +0000)]

added more extantLock methods and test for clientList monitoring (using FileWatcher.setState())

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@77 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 24 Oct 2005 16:01:07 +0000 (16:01 +0000)]

typo fix.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@76 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 24 Oct 2005 13:32:28 +0000 (13:32 +0000)]

new fileWatcher method passes lock for changed file back to the caller.
ClientsFile methods extended to take an existing lock as a parameter.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@75 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 24 Oct 2005 13:31:23 +0000 (13:31 +0000)]

added automatic channel closure for failed locks. (suggest this class becomes a singleton?)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@74 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Mon, 24 Oct 2005 10:10:02 +0000 (10:10 +0000)]

forgot to release a trial lock that failed.
Should consider automatically closing/releasing if lock fails.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@73 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Sat, 22 Oct 2005 21:58:11 +0000 (21:58 +0000)]

debugged fileWatcher logic and Lock release function.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@72 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 20 Oct 2005 16:51:28 +0000 (16:51 +0000)]

better time delay in command execution.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@71 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 20 Oct 2005 10:16:16 +0000 (10:16 +0000)]

fixed change test.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@70 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 20 Oct 2005 10:06:36 +0000 (10:06 +0000)]

better builder

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@69 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 20 Oct 2005 10:00:35 +0000 (10:00 +0000)]

added better check for file change (length + last modified)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@68 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Thu, 20 Oct 2005 09:58:13 +0000 (09:58 +0000)]

slackened lock_release success requirement.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@67 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

amwaterhouse [Fri, 14 Oct 2005 15:45:59 +0000 (15:45 +0000)]

Dataset should not contain gaps

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@66 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 12 Oct 2005 15:41:53 +0000 (15:41 +0000)]

franks data and topali analysis

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@65 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 12 Oct 2005 15:36:46 +0000 (15:36 +0000)]

updated core objects from latest schema (dbRef)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@64 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

amwaterhouse [Wed, 12 Oct 2005 10:57:01 +0000 (10:57 +0000)]

Dbref attributes are of type string

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@63 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Wed, 12 Oct 2005 10:46:59 +0000 (10:46 +0000)]

modified FileWatcher to only register file change after a lock release (incurs a momentary file lock).
tested multi-process watching.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@62 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 11 Oct 2005 21:15:55 +0000 (21:15 +0000)]

ClientsFileTest debugged and verified.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@61 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 11 Oct 2005 17:35:29 +0000 (17:35 +0000)]

added test config for eclipse

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@60 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 11 Oct 2005 17:34:09 +0000 (17:34 +0000)]

test clientsFile handlers.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@59 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 11 Oct 2005 09:57:51 +0000 (09:57 +0000)]

quick update

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@58 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Tue, 11 Oct 2005 09:57:32 +0000 (09:57 +0000)]

quick update

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@57 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Sat, 8 Oct 2005 09:22:45 +0000 (09:22 +0000)]

accidental deletion of vamsas Client build config (now renamed)

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@56 be28352e-c001-0410-b1a7-c7978e42abec

commit | commitdiff | tree

jprocter [Fri, 7 Oct 2005 15:14:53 +0000 (15:14 +0000)]

random bits and pieces whilst in hamburg - beginnings of file handliongimpmementation.

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@55 be28352e-c001-0410-b1a7-c7978e42abec