jprocter [Thu, 14 Dec 2006 18:49:07 +0000 (18:49 +0000)]
refactoring org to uk - never use f**ng eclipse
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@292
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:48:08 +0000 (18:48 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@291
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:47:51 +0000 (18:47 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@290
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:47:18 +0000 (18:47 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@289
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:43:00 +0000 (18:43 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@288
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:42:43 +0000 (18:42 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@287
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:41:20 +0000 (18:41 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@286
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:40:16 +0000 (18:40 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@285
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:39:48 +0000 (18:39 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@284
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:27:53 +0000 (18:27 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@283
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:27:16 +0000 (18:27 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@282
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:26:15 +0000 (18:26 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@281
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:20:51 +0000 (18:20 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@280
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:18:43 +0000 (18:18 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@279
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:18:26 +0000 (18:18 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@278
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:17:24 +0000 (18:17 +0000)]
refactoring org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@277
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:16:54 +0000 (18:16 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@276
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:16:15 +0000 (18:16 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@275
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:16:14 +0000 (18:16 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@274
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:08:11 +0000 (18:08 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@273
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 18:05:40 +0000 (18:05 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@272
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:54:15 +0000 (17:54 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@271
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:52:40 +0000 (17:52 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@270
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:52:15 +0000 (17:52 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@269
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:51:17 +0000 (17:51 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@268
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:50:39 +0000 (17:50 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@267
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:50:38 +0000 (17:50 +0000)]
refactored org to uk
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@266
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:44:21 +0000 (17:44 +0000)]
broken refactoring
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@265
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:42:54 +0000 (17:42 +0000)]
backtrack
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@264
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:15:29 +0000 (17:15 +0000)]
refactored from org.vamsas to uk.ac.vamsas
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@263
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:11:07 +0000 (17:11 +0000)]
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@262
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 17:08:32 +0000 (17:08 +0000)]
refactored from org.vamsas to uk.ac.vamsas
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@261
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 16:40:55 +0000 (16:40 +0000)]
remove old ebi packages
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@260
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 16:21:49 +0000 (16:21 +0000)]
quick commit before refactoring
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@259
be28352e-c001-0410-b1a7-
c7978e42abec
pmarguerite [Thu, 14 Dec 2006 16:19:27 +0000 (16:19 +0000)]
added SimpleClientFactory implementation and new class SessionsFile to deal with the list of active sessions
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@258
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Thu, 14 Dec 2006 16:15:36 +0000 (16:15 +0000)]
Updated docs and logging for the picking api.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@257
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 12:26:59 +0000 (12:26 +0000)]
modifiable attribute is now a string rather than a boolean. See 'locks' type documentation in vamsas.xsd
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@256
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Thu, 14 Dec 2006 11:56:17 +0000 (11:56 +0000)]
Picking code updated with full basic implementation of message sending and server restart code.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@255
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 14 Dec 2006 10:25:25 +0000 (10:25 +0000)]
refactored mapping to mapList type in both DbRef and SeqType object.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@254
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Wed, 13 Dec 2006 17:03:37 +0000 (17:03 +0000)]
First check-in of the picking api.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@253
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 13 Dec 2006 16:45:02 +0000 (16:45 +0000)]
IObjectUpdate interface introduction.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@252
be28352e-c001-0410-b1a7-
c7978e42abec
amwaterhouse [Wed, 13 Dec 2006 16:32:21 +0000 (16:32 +0000)]
Mapping element added
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@251
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Dec 2006 23:52:36 +0000 (23:52 +0000)]
first round of todos for codefest
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@250
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Dec 2006 23:49:50 +0000 (23:49 +0000)]
basic ideas for per-object update interface
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@249
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Dec 2006 23:43:21 +0000 (23:43 +0000)]
added todo for making library automatically construct the user handle
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@248
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Dec 2006 11:02:13 +0000 (11:02 +0000)]
new stuff for vamsas hack.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@247
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Sun, 17 Sep 2006 14:42:32 +0000 (14:42 +0000)]
show vamsasId for aligments.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@246
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Sun, 17 Sep 2006 14:42:13 +0000 (14:42 +0000)]
tidier file locks - lock file is removed on JVM exit.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@245
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Sun, 17 Sep 2006 14:41:31 +0000 (14:41 +0000)]
ensured that hash binding vorbaIds is passed to client document object for vorba object lookup methods.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@244
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 13 Sep 2006 14:25:32 +0000 (14:25 +0000)]
jalview'esque vamsas session example for org.vamsas.test.simpleclient.ArchiveClient test model.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@243
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 13 Sep 2006 14:24:57 +0000 (14:24 +0000)]
bug fix to ensure valid and vorbaIds are generated and stored in vamsas object model
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@242
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Sep 2006 10:20:55 +0000 (10:20 +0000)]
objects regenerated with valid schema (without excess id field cancelled in previous commit)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@241
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Sep 2006 10:19:48 +0000 (10:19 +0000)]
removed excess id field (cancels previous commit)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@240
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Sep 2006 10:07:11 +0000 (10:07 +0000)]
bugfixed org.vamsas.test.simpleclient.ArchiveClient and made VorbaId mechanism more rigorous.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@239
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 12 Sep 2006 10:04:04 +0000 (10:04 +0000)]
added id for RangeAnnotation types.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@238
be28352e-c001-0410-b1a7-
c7978e42abec
imilne [Fri, 8 Sep 2006 12:12:01 +0000 (12:12 +0000)]
Added a javadoc Ant build task.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@237
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 6 Sep 2006 13:43:37 +0000 (13:43 +0000)]
added V_parent reference to parent object in document.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@236
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Tue, 5 Sep 2006 09:50:42 +0000 (09:50 +0000)]
enum constants for Glyph types.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@235
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 1 Sep 2006 17:02:21 +0000 (17:02 +0000)]
updated test cases for spring 2006 schema, and major debug of locking system
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@234
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 1 Sep 2006 17:01:10 +0000 (17:01 +0000)]
added some example logging configs
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@233
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 1 Sep 2006 17:00:47 +0000 (17:00 +0000)]
updated binding with castor-1.0.2
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@232
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 1 Sep 2006 16:57:38 +0000 (16:57 +0000)]
Java binding for new document schema (from 1st hinxton vamsas Meeting)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@231
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 24 May 2006 13:32:33 +0000 (13:32 +0000)]
introducing Lock File based locking (for portability) - part implemented.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@230
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 24 May 2006 13:30:43 +0000 (13:30 +0000)]
changes propagated from Provenance.App entry.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@229
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Wed, 24 May 2006 13:30:25 +0000 (13:30 +0000)]
changes propagated from Provenance.App entry.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@228
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 22 May 2006 16:31:32 +0000 (16:31 +0000)]
refactored uri type to a link element and replaced type references with element references.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@227
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 22 May 2006 16:29:12 +0000 (16:29 +0000)]
refactored uri type to a link element and replaced type references with element references.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@226
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 22 May 2006 16:27:33 +0000 (16:27 +0000)]
fixed loss of plural alignmentannotation in new schema version
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@225
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 22 May 2006 16:17:30 +0000 (16:17 +0000)]
refactored uri type to a link element and replaced type references with element references.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@224
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 22 May 2006 15:59:40 +0000 (15:59 +0000)]
autogenerated java classes for current schema
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@223
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 22 May 2006 15:50:38 +0000 (15:50 +0000)]
added 'attachment' element example.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@222
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 22 May 2006 15:50:20 +0000 (15:50 +0000)]
post-meeting refinements and commenting.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@221
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 19 May 2006 16:53:59 +0000 (16:53 +0000)]
still refactoring the rangeType and features/annotation elements.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@220
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Thu, 18 May 2006 17:01:14 +0000 (17:01 +0000)]
current vamsas type document. Still being worked on and refined.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@219
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 27 Mar 2006 12:18:18 +0000 (12:18 +0000)]
added registration/object retrieval methods to ClientDoc.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@218
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 27 Mar 2006 12:17:43 +0000 (12:17 +0000)]
Incorrect bounds for Provenance type in Dataset.DatasetAnnotations. (could have an array of provenance arrays).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@217
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Mon, 27 Mar 2006 11:46:41 +0000 (11:46 +0000)]
Incorrect bounds for Provenance type in Dataset.DatasetAnnotations. (could have an array of provenance arrays).
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@216
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Sun, 26 Mar 2006 17:08:41 +0000 (17:08 +0000)]
debugged the runnable main for ArchiveClient. ClientDoc provides api returned by ArchiveClient.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@215
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Sun, 26 Mar 2006 17:07:33 +0000 (17:07 +0000)]
latest version is Beta. but we might change this :)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@214
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Sun, 26 Mar 2006 17:06:51 +0000 (17:06 +0000)]
added new constructor and File object accessor to make VamsasFile usable with VamsasArchive.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@213
be28352e-c001-0410-b1a7-
c7978e42abec
jprocter [Fri, 24 Mar 2006 19:16:26 +0000 (19:16 +0000)]
fixed (hopefully) locking/read problems in test.simpleclient.VamsasArchive/Watcher classes and commented out the RandomAccess based reading/writing for mo.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@212
be28352e-c001-0410-b1a7-
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jprocter [Fri, 24 Mar 2006 19:13:22 +0000 (19:13 +0000)]
fixed leaky lock (answers todo about verifying that channel.close() should be called before lock.release())
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@211
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jprocter [Fri, 24 Mar 2006 19:04:20 +0000 (19:04 +0000)]
new target - jar, and added an 'exclude' for Pierre's java5 vamav code (for the moment)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@210
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jprocter [Fri, 24 Mar 2006 19:03:00 +0000 (19:03 +0000)]
simple test of locked IO based on ArchiveWatcher. Extend this to quickly incorporate vamsas dataset updates into a program (? really)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@209
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jprocter [Fri, 24 Mar 2006 19:01:45 +0000 (19:01 +0000)]
commented out stream constructor for vamsasArchive.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@208
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pmarguerite [Fri, 24 Mar 2006 15:40:31 +0000 (15:40 +0000)]
vamsas api example classes - AstexViewer@MSD-EBI
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@207
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jprocter [Fri, 24 Mar 2006 10:21:36 +0000 (10:21 +0000)]
developing streamReader tests.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@206
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jprocter [Thu, 23 Mar 2006 19:27:57 +0000 (19:27 +0000)]
still dealing with JarInputStream issues.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@205
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jprocter [Thu, 23 Mar 2006 14:13:46 +0000 (14:13 +0000)]
fixed exception when trying to cancel unwritten archives.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@204
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jprocter [Thu, 23 Mar 2006 14:10:51 +0000 (14:10 +0000)]
debug output - just incase strange things are happening when trying to read jars
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@203
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pmarguerite [Thu, 23 Mar 2006 13:48:35 +0000 (13:48 +0000)]
fix call of the argument parsing - '!' missing
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@202
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jprocter [Thu, 23 Mar 2006 11:41:09 +0000 (11:41 +0000)]
locking for windows (XP) partly debugged. ClientsFileTest watchers do not behave perfectly yet.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@201
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pmarguerite [Wed, 22 Mar 2006 17:29:00 +0000 (17:29 +0000)]
'!' missing for testing if the session directory is readeable.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@200
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jprocter [Wed, 22 Mar 2006 17:04:50 +0000 (17:04 +0000)]
more fixes for clientdocument/simpleclient. Testign the vamsasArchive reader and sessionfile mechanism (windows patches)
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@199
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jprocter [Wed, 22 Mar 2006 14:12:54 +0000 (14:12 +0000)]
finished the Appdata/ClientDocument update mechanism. Untested!
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@198
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jprocter [Wed, 22 Mar 2006 14:12:12 +0000 (14:12 +0000)]
added new method for writing an AppData jar entry directly from an InputStream.
Also reprioritised some TODOs and made comments
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@197
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jprocter [Tue, 21 Mar 2006 17:18:41 +0000 (17:18 +0000)]
intermediate cjeckin - nfs woes!
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@196
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jprocter [Tue, 21 Mar 2006 11:59:49 +0000 (11:59 +0000)]
rearranged some todos and preparing to implement SimpleClient and ClientDocument IO stuff.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@195
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jprocter [Tue, 21 Mar 2006 11:58:54 +0000 (11:58 +0000)]
refactored generally useful higher level document IO methods to base class.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@194
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jprocter [Mon, 20 Mar 2006 22:57:05 +0000 (22:57 +0000)]
SimpleClientAppdata implemented but untested.
git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@193
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