From f879178793c14038180e56ddddbc1812fb9473ec Mon Sep 17 00:00:00 2001 From: kiramt Date: Tue, 5 Sep 2017 14:04:17 +0100 Subject: [PATCH] JAL-2722 Reinstate allGroups value setting in getResidueColour --- src/jalview/gui/SequenceRenderer.java | 1 + 1 file changed, 1 insertion(+) diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java index 5be7f55..0a1e8ef 100755 --- a/src/jalview/gui/SequenceRenderer.java +++ b/src/jalview/gui/SequenceRenderer.java @@ -95,6 +95,7 @@ public class SequenceRenderer implements jalview.api.SequenceRenderer public Color getResidueColour(final SequenceI seq, int position, FeatureColourFinder finder) { + allGroups = av.getAlignment().findAllGroups(seq); return resColourFinder.getResidueColour(av.getShowBoxes(), av.getResidueShading(), allGroups, seq, position, -- 1.7.10.2