From 97acc4fa0742948992abd1f3ca982c6df4eff653 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 22 Nov 2006 14:58:13 +0000
Subject: [PATCH] frameListener must call close if AlignFrame

---
 src/jalview/bin/JalviewLite.java |    5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index 09e8701..1fbb82e 100755
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -28,6 +28,7 @@ import java.applet.*;
 
 import java.awt.*;
 import java.awt.event.*;
+import jalview.appletgui.FeatureSettings;
 
 
 /**
@@ -177,6 +178,8 @@ public class JalviewLite extends Applet
             {
                 public void windowClosing(WindowEvent e)
                 {
+                  if(frame instanceof AlignFrame)
+                    ((AlignFrame)frame).closeMenuItem_actionPerformed();
                     if(currentAlignFrame == frame)
                     {
                       currentAlignFrame = null;
@@ -360,7 +363,7 @@ public class JalviewLite extends Applet
               if(param !=null && param.equalsIgnoreCase("true"))
               {
                 currentAlignFrame.viewport.showSequenceFeatures(true);
-                currentAlignFrame.featureSettings_actionPerformed();
+                new FeatureSettings(currentAlignFrame.alignPanel);
               }
 
              param = getParameter("annotations");
-- 
1.7.10.2