From bb52159f5a5a001b9450fa05f110cdb9411a3e9a Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 19 Jan 2007 15:52:21 +0000
Subject: [PATCH] Neeed to know protocol for annotation loading

---
 src/jalview/bin/JalviewLite.java |    3 ++-
 src/jalview/gui/AlignFrame.java  |    2 +-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index af01a99..4efab35 100755
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -374,7 +374,8 @@ public class JalviewLite extends Applet
 
                new AnnotationFile().readAnnotationFile(
                    currentAlignFrame.viewport.getAlignment(),
-                   param);
+                   param,
+                   protocol);
 
                currentAlignFrame.alignPanel.fontChanged();
                currentAlignFrame.alignPanel.setScrollValues(0,0);
diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 48758cd..bb722a5 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -3287,7 +3287,7 @@ public void drop(DropTargetDropEvent evt)
       }
 
       boolean isAnnotation = new AnnotationFile().readAnnotationFile(viewport.
-          alignment, file);
+          alignment, file, protocol);
 
       if (!isAnnotation)
       {
-- 
1.7.10.2