From 2ef43e1e505af2742f1c3a59619c8a4357ea82c4 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 9 Aug 2006 15:54:07 +0000
Subject: [PATCH] Endres check for wrap alignment

---
 src/jalview/appletgui/AnnotationPanel.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index 82d2a1e..006d643 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -558,6 +558,7 @@ public class AnnotationPanel
 
               default:
                 g.setColor(Color.gray);
+                if(!av.wrapAlignment || endRes==av.endRes)
                 g.fillRect(lastSSX, y + 6 + iconOffset,
                            (x*av.charWidth) - lastSSX, 2);
 
-- 
1.7.10.2