From 30f1d74ede6bfb5fd2c35688d8c111f72115e2b9 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 27 Oct 2011 12:29:12 +0100
Subject: [PATCH 1/1] (JAL-969) todo test re refactoring and possible change
 in semantics

---
 src/jalview/bin/JalviewLite.java |    2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index cff6987..311e48d 100644
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -492,6 +492,8 @@ public class JalviewLite extends Applet implements
       boolean seqlimits = suffix.equalsIgnoreCase("true");
       if (alf.viewport.getSelectionGroup() != null)
       {
+        // JBPNote: getSelectionAsNewSequence behaviour has changed - this method now returns a full copy of sequence data
+        // TODO consider using getSequenceSelection instead here
         String reply = new AppletFormatAdapter().formatSequences(format,
                 new Alignment(alf.viewport.getSelectionAsNewSequence()),
                 seqlimits);
-- 
1.7.10.2