From 623d576bab61337289656eab9e4e26cf63e0afc0 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 19 Jul 2006 10:41:23 +0000
Subject: [PATCH] Highlight hidden columns after revealing

---
 src/jalview/gui/ColumnSelection.java |   13 +++++++++++++
 src/jalview/gui/TreePanel.java       |    4 ++--
 2 files changed, 15 insertions(+), 2 deletions(-)

diff --git a/src/jalview/gui/ColumnSelection.java b/src/jalview/gui/ColumnSelection.java
index 1032c5b..eb6cafe 100755
--- a/src/jalview/gui/ColumnSelection.java
+++ b/src/jalview/gui/ColumnSelection.java
@@ -367,6 +367,14 @@ public class ColumnSelection
 
     public void revealAllHiddenColumns(AlignViewport av)
     {
+      for(int i=0; i<hiddenColumns.size(); i++)
+      {
+        int [] region = (int[])hiddenColumns.elementAt(i);
+        for(int j=region[0]; j<region[1]; j++)
+        {
+          addElement(j);
+        }
+      }
       av.hasHiddenColumns = false;
       hiddenColumns = null;
     }
@@ -378,6 +386,11 @@ public class ColumnSelection
         int [] region = (int[])hiddenColumns.elementAt(i);
         if( res == region[0])
         {
+          for (int j = region[0]; j < region[1]; j++)
+          {
+            addElement(j);
+          }
+
           hiddenColumns.remove(region);
           break;
         }
diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index a25b01d..190f15c 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -84,9 +84,9 @@ public class TreePanel extends GTreePanel
      * @param pwtype DOCUMENT ME!
      */
     public TreePanel(AlignViewport av,
-                     NewickFile newtree,
                      String type,
-                     String pwtype)
+                     String pwtype,
+                     NewickFile newtree)
     {
       super();
       initTreePanel(av, type, pwtype, newtree);
-- 
1.7.10.2