From 67fe33692d163752fd467468b18ace4a9b4eac7d Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 20 May 2005 13:30:06 +0000
Subject: [PATCH] startup file added

---
 src/jalview/gui/Preferences.java    |   40 ++++++++++++++++++++++++++++++--
 src/jalview/jbgui/GPreferences.java |   43 +++++++++++++++++++++++++++++++++--
 2 files changed, 79 insertions(+), 4 deletions(-)

diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index 075065e..1553de5 100755
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -2,12 +2,14 @@ package jalview.gui;
 
 import jalview.jbgui.*;
 import jalview.schemes.*;
+import jalview.io.*;
 
 import jalview.bin.Cache;
 import javax.swing.*;
 import java.awt.event.ActionEvent;
 import java.awt.*;
 
+
 public class Preferences extends GPreferences
 {
   static boolean preferencesLoaded=false;
@@ -23,6 +25,8 @@ public class Preferences extends GPreferences
   public static String fontStyle;
   public static char gapSymbol='-';
   public static String defaultColour=null;
+  public static boolean showStartupFile=true;
+  public static String startupFile = "http://www.compbio.dundee.ac.uk/~andrew/jalviewTEST/fasta";
 
   JInternalFrame frame;
 
@@ -36,7 +40,6 @@ public class Preferences extends GPreferences
   if(string!=null)
     showFullscreen = Boolean.valueOf(string).booleanValue();
 
-
   string = Cache.getProperty("SHOW_ANNOTATIONS");
       if(string!=null)
     showAnnotation = Boolean.valueOf(string).booleanValue();
@@ -67,6 +70,13 @@ public class Preferences extends GPreferences
   if(string!=null)
       defaultColour = string;
 
+  string = Cache.getProperty("STARTUP_FILE");
+    if(string!=null)
+      startupFile = string;
+
+  string = Cache.getProperty("SHOW_STARTUP_FILE");
+        if(string!=null)
+      showStartupFile = Boolean.valueOf(string).booleanValue();
 
       preferencesLoaded = true;
   }
@@ -78,7 +88,7 @@ public class Preferences extends GPreferences
 
     frame = new JInternalFrame();
     frame.setContentPane(this);
-    Desktop.addInternalFrame(frame, "Preferences", 480,350 );
+    Desktop.addInternalFrame(frame, "Preferences", 480,390 );
 
     fullID.setSelected(showFullId);
     String string = Cache.getProperty("SHOW_FULLSCREEN");
@@ -126,6 +136,9 @@ public class Preferences extends GPreferences
 
    gapSymbolCB.setSelectedItem( gapSymbol+"" );
 
+   startupCheckbox.setSelected(showStartupFile);
+   startupFileTextfield.setText(startupFile);
+
   }
 
   public void ok_actionPerformed(ActionEvent e)
@@ -141,6 +154,8 @@ public class Preferences extends GPreferences
     fontName = fontNameCB.getSelectedItem().toString();
     fontSize = fontSizeCB.getSelectedItem().toString();
     fontStyle = fontStyleCB.getSelectedItem().toString();
+    startupFile = startupFileTextfield.getText();
+    showStartupFile = startupCheckbox.isSelected();
 
     Cache.setProperty("SHOW_FULL_ID", Boolean.toString(showFullId));
     Cache.setProperty("SHOW_FULLSCREEN", Boolean.toString( showFullscreen ) );
@@ -157,12 +172,33 @@ public class Preferences extends GPreferences
     Cache.setProperty("FONT_STYLE", fontStyle);
     Cache.setProperty("FONT_SIZE", fontSize);
 
+    Cache.setProperty("STARTUP_FILE", startupFile);
+    Cache.setProperty("SHOW_STARTUP_FILE", Boolean.toString(showStartupFile));
+
+
+
     try    {
       frame.setClosed(true);
     }    catch (Exception ex)  {}
 
   }
 
+  public void startupFileTextfield_mouseClicked()
+  {
+    JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY"),
+        new String[]{"fa, fasta, fastq", "aln",  "pfam", "msf", "pir","blc","jar"},
+        new String[]{"Fasta", "Clustal", "PFAM", "MSF", "PIR", "BLC", "Jalview"}
+       ,null);
+   chooser.setFileView(new JalviewFileView());
+   chooser.setDialogTitle("Select startup file");
+   int value = chooser.showOpenDialog(this);
+   if(value == JalviewFileChooser.APPROVE_OPTION)
+   {
+     startupFileTextfield.setText( chooser.getSelectedFile().getAbsolutePath() );
+   }
+  }
+
+
   public void cancel_actionPerformed(ActionEvent e)
   {
     try{
diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index a3091e4..d4929b4 100755
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -5,6 +5,8 @@ import java.awt.*;
 import java.awt.event.ActionListener;
 import java.awt.event.ActionEvent;
 import javax.swing.border.TitledBorder;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
 
 public class GPreferences
     extends JPanel
@@ -50,7 +52,7 @@ public class GPreferences
     quality.setText("Quality");
     quality.setBounds(new Rectangle(248, 53, 81, 23));
     jPanel2.setBorder(titledBorder1);
-    jPanel2.setBounds(new Rectangle(9, 20, 442, 206));
+    jPanel2.setBounds(new Rectangle(9, 20, 442, 241));
     jPanel2.setLayout(null);
     fullID.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
     fullID.setHorizontalAlignment(SwingConstants.RIGHT);
@@ -111,6 +113,29 @@ public class GPreferences
     fontNameCB.setBounds(new Rectangle(121, 109, 183, 21));
     gapSymbolCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
     gapSymbolCB.setBounds(new Rectangle(121, 140, 67, 21));
+    startupCheckbox.setText("Open file");
+    startupCheckbox.setBounds(new Rectangle(4, 200, 115, 23));
+    startupCheckbox.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        jCheckBox1_actionPerformed(e);
+      }
+    });
+    startupCheckbox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+    startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);
+    startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);
+    startupCheckbox.setSelected(true);
+    startupFileTextfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+    startupFileTextfield.setBounds(new Rectangle(122, 202, 309, 20));
+    startupFileTextfield.addMouseListener(new MouseAdapter()
+    {
+      public void mouseClicked(MouseEvent e)
+      {
+        startupFileTextfield_mouseClicked();
+      }
+    });
+
     jPanel2.add(annotations);
     jPanel2.add(conservation);
     jPanel2.add(quality);
@@ -125,13 +150,14 @@ public class GPreferences
     jPanel2.add(fontStyleCB);
     jPanel2.add(identity);
     jPanel2.add(fullScreen);
+    jPanel2.add(startupCheckbox);
+    jPanel2.add(startupFileTextfield);
     jPanel1.add(ok);
     jPanel1.add(cancel);
     this.add(visaulTab, java.awt.BorderLayout.CENTER);
     visaulTab.add(visual, "visual");
     visual.add(jPanel2);
     this.add(jPanel1, java.awt.BorderLayout.SOUTH);
-
     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();
     dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);
     gapSymbolCB.setRenderer(dlcr);
@@ -160,6 +186,8 @@ public class GPreferences
   protected JComboBox fontStyleCB = new JComboBox();
   protected JComboBox fontNameCB = new JComboBox();
   protected JComboBox gapSymbolCB = new JComboBox();
+  protected JCheckBox startupCheckbox = new JCheckBox();
+  protected JTextField startupFileTextfield = new JTextField();
   public void ok_actionPerformed(ActionEvent e)
   {
 
@@ -175,4 +203,15 @@ public class GPreferences
 
   }
 
+  public void jCheckBox1_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+
+  public void startupFileTextfield_mouseClicked()
+  {
+
+  }
+
 }
-- 
1.7.10.2