From 71437ea48fd9a83b59da4dc722f66ab30ae77257 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Thu, 7 Apr 2011 22:18:22 +0000
Subject: [PATCH] allow groovy scripts to be run when in headless mode - pass
 startupAlFrame as context

---
 src/jalview/bin/Jalview.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index ba2d3bd..80f3722 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -670,7 +670,7 @@ public class Jalview
        * = new Binding(); binding.setVariable("input", "world");
        * gse.run("hello.groovy", binding); </code>
        */
-      ClassLoader cl = jalviewContext.getClass().getClassLoader();
+      ClassLoader cl = (jalviewContext[0]!=null ? jalviewContext[0] : jalviewContext[1]).getClass().getClassLoader();
       Class gbindingc = cl.loadClass("groovy.lang.Binding");
       Constructor gbcons = gbindingc.getConstructor(null);
       Object gbinding = gbcons.newInstance(null);
-- 
1.7.10.2