From 9cbe7b851c119115631c2af7e30ef4a806496bde Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 30 Aug 2013 12:33:28 +0100
Subject: [PATCH] JAL-1367 clear the current representative sequence

---
 src/jalview/gui/AlignFrame.java |   10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index ceb08ee..05799a8 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5500,7 +5500,15 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       alignPanel.paintAlignment(true);
     }
   }
-
+  public void clearAlignmentSeqRep()
+  {
+    if (viewport.getAlignment().hasSeqrep()) {
+      viewport.getAlignment().setSeqrep(null);
+      PaintRefresher.Refresh(this, viewport.getSequenceSetId());
+      alignPanel.updateAnnotation();
+      alignPanel.paintAlignment(true);
+    }
+  }
   /**
    * make the given alignmentPanel the currently selected tab
    * 
-- 
1.7.10.2