From a83836da9bad8f9cee149cf7dc443bf2a8c7648b Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 28 Jul 2006 13:16:05 +0000
Subject: [PATCH] If colour hasnt been created, make a new one

---
 src/jalview/appletgui/FeatureRenderer.java |   11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/src/jalview/appletgui/FeatureRenderer.java b/src/jalview/appletgui/FeatureRenderer.java
index 0f9f393..66a9bc2 100755
--- a/src/jalview/appletgui/FeatureRenderer.java
+++ b/src/jalview/appletgui/FeatureRenderer.java
@@ -318,6 +318,9 @@ public class FeatureRenderer
 
     void findAllFeatures()
     {
+      jalview.schemes.UserColourScheme ucs = new
+          jalview.schemes.UserColourScheme();
+
       av.featuresDisplayed = new Hashtable();
       Vector allfeatures = new Vector();
       for (int i = 0; i < av.alignment.getHeight(); i++)
@@ -332,6 +335,14 @@ public class FeatureRenderer
         {
           if (!av.featuresDisplayed.containsKey(features[index].getType()))
           {
+            if (getColour(features[index].getType()) == null)
+            {
+              featureColours.put(features[index].getType(),
+                                 ucs.createColourFromName(features[index].
+                  getType()));
+            }
+
+
             av.featuresDisplayed.put(features[index].getType(),
                                   new Integer( getColour(features[index].getType()).getRGB()) );
             allfeatures.addElement(features[index].getType());
-- 
1.7.10.2