From af46fdc9918cdfe38c7f74a6000ed1a800bffa1e Mon Sep 17 00:00:00 2001 From: jprocter Date: Mon, 30 May 2005 15:46:56 +0000 Subject: [PATCH] propagated use of jalview.util.GapChars for gap removal. --- src/jalview/ws/MsaWSClient.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/ws/MsaWSClient.java b/src/jalview/ws/MsaWSClient.java index 2141f6f..36c3823 100755 --- a/src/jalview/ws/MsaWSClient.java +++ b/src/jalview/ws/MsaWSClient.java @@ -109,7 +109,7 @@ public class MsaWSClient seqarray[i] = new vamsas.objects.simple.Sequence(); seqarray[i].setId(newname); seqarray[i].setSeq((submitGaps) ? msa[i].getSequence() - : AlignSeq.extractGaps("-. ", msa[i].getSequence())); + : AlignSeq.extractGaps(jalview.util.Comparison.GapChars, msa[i].getSequence())); } this.seqs = new vamsas.objects.simple.SequenceSet(); -- 1.7.10.2