From c80c766368e646a58a8e467cfdd2785a635f7fed Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 24 Aug 2005 10:57:55 +0000
Subject: [PATCH] Set threshold 0 if conservation

---
 src/jalview/appletgui/AlignFrame.java |    1 +
 1 file changed, 1 insertion(+)

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 0d6682f..fae50d9 100755
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -918,6 +918,7 @@ public class AlignFrame
         else
         {
           sg.cs.setConservation(null);
+          sg.cs.setThreshold(0, viewport.getIgnoreGapsConsensus());
         }
 
       }
-- 
1.7.10.2