From cd71fb9ef1a21678ad648ba13564b658b53ab834 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 9 Jun 2006 16:15:23 +0000
Subject: [PATCH] parseFeaturesFile

---
 src/jalview/bin/Jalview.java |    8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index bdfe3ae..50faf67 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -105,8 +105,8 @@ public class Jalview
           try
           {
             UIManager.setLookAndFeel(
-                   UIManager.getSystemLookAndFeelClassName()
-            //        UIManager.getCrossPlatformLookAndFeelClassName()
+                UIManager.getSystemLookAndFeelClassName()
+                //        UIManager.getCrossPlatformLookAndFeelClassName()
 //"com.sun.java.swing.plaf.gtk.GTKLookAndFeel"
 //"javax.swing.plaf.metal.MetalLookAndFeel"
 //"com.sun.java.swing.plaf.windows.WindowsLookAndFeel"
@@ -168,13 +168,13 @@ public class Jalview
             data = aparser.getValue("groups");
             if (data != null)
             {
-              af.parseGroupsFile(data);
+              af.parseFeaturesFile(data, protocol);
               System.out.println("Added "+data);
             }
             data = aparser.getValue("features");
             if (data != null)
             {
-              af.parseGroupsFile(data);
+              af.parseFeaturesFile(data, protocol);
               System.out.println("Added "+data);
             }
 
-- 
1.7.10.2