From db1b28364c2034ea432c0668100c1ec9e0d17523 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Thu, 4 May 2017 13:56:11 +0100 Subject: [PATCH 1/1] =?utf8?q?fix=20for=20JAL-2509=20-=20don=E2=80=99t=20rep?= =?utf8?q?lace=20all=20bracket=20types=20with=20()?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- src/jalview/io/StockholmFile.java | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java index 3b0dab4..a47e1ea 100644 --- a/src/jalview/io/StockholmFile.java +++ b/src/jalview/io/StockholmFile.java @@ -800,9 +800,9 @@ public class StockholmFile extends AlignFile { String convert1, convert2 = null; - convert1 = OPEN_PAREN.replaceAll(annots); - convert2 = CLOSE_PAREN.replaceAll(convert1); - annots = convert2; + // convert1 = OPEN_PAREN.replaceAll(annots); + // convert2 = CLOSE_PAREN.replaceAll(convert1); + // annots = convert2; String type = label; if (label.contains("_cons")) -- 1.7.10.2