From dda6f52cf00edb75477b1ca08e247f9de06ed6da Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 21 Jan 2008 16:55:36 +0000
Subject: [PATCH] javadoc

---
 src/jalview/gui/AlignFrame.java   |    7 ++++++-
 src/jalview/io/FormatAdapter.java |    3 ++-
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 938b047..2a91435 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -160,7 +160,12 @@ public class AlignFrame
    addKeyListener();
 
   }
-
+  /**
+   * Change the filename and format for the alignment, and
+   * enable the 'reload' button functionality.
+   * @param file valid filename
+   * @param format format of file
+   */
   public void setFileName(String file, String format)
   {
      fileName = file;
diff --git a/src/jalview/io/FormatAdapter.java b/src/jalview/io/FormatAdapter.java
index 3cbd73b..983d02e 100755
--- a/src/jalview/io/FormatAdapter.java
+++ b/src/jalview/io/FormatAdapter.java
@@ -21,7 +21,8 @@ package jalview.io;
 import jalview.datamodel.*;
 
 /**
- * DOCUMENT ME!
+ * Additional formatting methods used by the application
+ * in a number of places. 
  *
  * @author $author$
  * @version $Revision$
-- 
1.7.10.2