jalview.git
2007-02-06 amwaterhouseApplet params cant read tab character
2007-02-06 amwaterhouseAllow for frame insets
2007-02-06 amwaterhouseFormat label
2007-02-06 jprocterdebug log message
2007-02-05 jproctersimplified and refactored along with cgi-script.
2007-02-05 amwaterhouseAlignment editing columns 0 and 1 fixed
2007-02-05 jproctercommand line hook for questionnaire url argument.
2007-02-05 jprocterkkv change
2007-02-05 jprocterclient side machinery for user questionnaire responses
2007-02-05 amwaterhouseFixed bug in trim right annotation adjust
2007-02-05 amwaterhousestop flickering annotationPanel
2007-02-05 amwaterhouseFixed bug in trim right annotation adjust
2007-02-05 amwaterhouseimage is panel size
2007-02-05 amwaterhouseapplet can define groups as parameters
2007-02-02 amwaterhouseDont add group if seqs not found
2007-02-02 amwaterhousegetWidth -1 for trim right
2007-02-02 amwaterhousecheck annotation size when cutting
2007-02-02 amwaterhouseannotation might have been deleted
2007-02-02 amwaterhousecatch control down before editing null pointer
2007-02-02 amwaterhouse22 = scrollbar and insets widthcvs diff gui/AlignmentPa...
2007-02-02 amwaterhouseMust allow for scollbar and frame insets when getting...
2007-02-02 amwaterhouseLookandFeel must be set in headless state as window...
2007-02-01 amwaterhouseremoved deprecated bits
2007-02-01 amwaterhousefind colours uncommented
2007-02-01 amwaterhousesequence.getStart() in findTrueIndex
2007-02-01 amwaterhouseget fontmetrics from pg
2007-02-01 amwaterhouseDont add null tooltip
2007-02-01 amwaterhouseNew description
2007-02-01 amwaterhousetooltips
2007-02-01 amwaterhouseset description for groups
2007-02-01 amwaterhouseDoesnt move with mouse, friendlier for mac users
2007-02-01 amwaterhouseDont repaint tooltip
2007-02-01 amwaterhouseOne class for edit name/description
2007-01-31 amwaterhouseslightly larger window edit name/desc
2007-01-31 amwaterhouseedit annotation name/description
2007-01-31 amwaterhouseCan edit annotation name/description
2007-01-31 amwaterhouseConsensus, conservation, quality labels may have changed
2007-01-31 amwaterhousealigned not used
2007-01-31 amwaterhouseDont export annotations if not visible
2007-01-31 amwaterhouseUnique name for new group and treegroup
2007-01-31 amwaterhouseAdjust features when cutting and pasting
2007-01-31 amwaterhousemake new dataset seq if residues deleted
2007-01-31 amwaterhousecopy feature: check for null values
2007-01-31 amwaterhousealigned not used
2007-01-30 amwaterhouseCheck valid residues in ss
2007-01-30 amwaterhouseCheck seqs in group exist in this alignment
2007-01-30 amwaterhouseAny character non aa or nucleotide is a space
2007-01-30 amwaterhousemoved painting routine
2007-01-30 amwaterhouseconsensusColouring never used
2007-01-30 amwaterhouseDraw helices correctly
2007-01-30 amwaterhouseUse util toHexString
2007-01-30 amwaterhouseOutput groups in annotation file
2007-01-29 amwaterhouseDont clear graphics g before drawing the image
2007-01-29 amwaterhouseImage for labels, stops flickering
2007-01-29 amwaterhouseNew view copies annotations across
2007-01-29 amwaterhouseTooltips for group names, descriptions
2007-01-29 amwaterhouseDescription added
2007-01-29 amwaterhouseSequenceGroup parsing added to annotation file
2007-01-29 amwaterhouseID_ITALICS option in preferences
2007-01-29 amwaterhousescaleAbove, left and right set when tab selection changes
2007-01-29 amwaterhouseMarios annotation bug fixed
2007-01-26 amwaterhouseAnnotationId is hashcode of object
2007-01-26 amwaterhouseOnly set the sequence oncecvs diff datamodel/Alignment...
2007-01-26 amwaterhouseAdjusts annotations for sequence edits
2007-01-26 amwaterhouseIf its null, set tip empty
2007-01-26 jprocterpreliminary documentation for DNA->protein codon featur...
2007-01-26 jprocteradded doc for PDBResNum features
2007-01-25 amwaterhouseCommand takes alignment, not gapChar
2007-01-25 amwaterhouseAnnotations move when full alignment edited
2007-01-25 amwaterhouseAnnotation adjustment moved to EditCommand
2007-01-25 amwaterhouseRemove unneccessary lines
2007-01-25 amwaterhouseAlignmentAnnotations require id
2007-01-25 amwaterhouseAllow for hidden columns
2007-01-25 amwaterhouseOnly output visible annotations
2007-01-25 amwaterhouseload/get Annotation
2007-01-25 amwaterhouseRemove unnecessary line
2007-01-25 amwaterhouseOutput annotations
2007-01-25 amwaterhouse1.1 enabled
2007-01-25 jprocterreinstating class implementation.
2007-01-25 jprocterchecks for irreflexive mapping in main tester
2007-01-24 amwaterhouseConservation etc have autoCalculated flag set true
2007-01-24 amwaterhouseAdjustAnnotations needs position, number and insert
2007-01-24 amwaterhouseThis constructor is never called
2007-01-24 amwaterhouseFeatures output for javascript
2007-01-24 amwaterhouseoutput now takes alignment, not just sequences
2007-01-24 amwaterhouseExtension to fastaFile for myhits
2007-01-24 jprocterrefactored to use jalview.analysis.Finder for searching...
2007-01-24 jprocterkkv change
2007-01-24 jprocterMap arbitrary series of non-overlapping integer interva...
2007-01-24 amwaterhousePage setup added
2007-01-23 amwaterhouseboolean for internal copies
2007-01-23 amwaterhouseHidden representatives moved from sequence to viewport
2007-01-23 jprocterrefactoring (added seqIndex/resIndex state for incremen...
2007-01-23 jprocterrefactored search algorithm from gui classes
2007-01-23 jproctertransfer resnum features now returns features (could...
2007-01-19 jprocterreoganization of PDB sequence fetching for sequence...
2007-01-19 jprocterPDBChain maintains reference to dataset of sequences...
2007-01-19 jprocterdatasetSequence derive method and some checks
2007-01-19 amwaterhouseexport features/annotations not for import
2007-01-19 amwaterhouseApplet can output and load annotations, features
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