jalview.git
2023-04-14 Ben SoaresJAL-629 Adding PAE and TFType at structure loading...
2023-04-12 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-04-12 Ben SoaresJAL-629 deleted test output file from repo
2023-04-12 Ben SoaresJAL-629 mild improvement to test
2023-04-12 Ben SoaresJAL-629 Fixed ~ based test for build server
2023-04-12 Ben SoaresJAL-629 Add substituteHomeDir to getDirname(). Tighten...
2023-04-12 Ben SoaresJAL-629 Put old -props back as will now use old parser
2023-04-12 Ben SoaresJAL-629 Fix non-multi string bootstrap arg bug.
2023-04-12 Ben SoaresJAL-629 setprop test disabled as feature is disabled
2023-04-12 Ben SoaresJAL-629 parse SubVals once with ArgValue. Ensure SubVal...
2023-04-12 Ben SoaresJAL-629 allow argfiles in argfiles, but avoid looping...
2023-04-12 Ben SoaresJAL-629 allow comments in argfiles '#'
2023-04-12 Ben SoaresJAL-629 DON'T use quotation marks in argfiles as they...
2023-04-05 Ben SoaresJAL-629 Tests for FileUtils. Tidying counter substituti...
2023-04-04 Ben SoaresJAL-629 more info in usage statement
2023-04-04 Ben SoaresJAL-629 Start of Usage statement
2023-04-04 Ben SoaresJAL-629 More consistent printing of --arguments. Exampl...
2023-04-04 Ben SoaresJAL-629 Remove debugging comment
2023-04-04 Ben SoaresJAL-629 --initsubstitutions as a bootstrap arg, new...
2023-04-03 Ben SoaresJAL-629 sort files from java glob for predictability...
2023-04-03 Ben SoaresJAL-629 Removed --headless to fix CommandsTest
2023-04-03 Ben SoaresJAL-629 added setprop. More filename based substitution...
2023-03-31 James ProcterMerge branch 'features/JAL-4134_treeviewerforcolumns... feature/JAL-4162_Read_and_write_Relaxed_PHYLIP_format new_feature/JAL-4019_ambiguous_base_colourscheme
2023-03-30 Ben SoaresJAL-629 More extensive tests with real files being...
2023-03-30 Ben SoaresJAL-629 fix bug for opening single named file with...
2023-03-30 Ben SoaresJAL-629 Don't use new ArgParser if there are no --args...
2023-03-30 Ben SoaresJAL-629 fix SubVals npe
2023-03-29 Ben SoaresJAL-629 extensive tests for ArgParser features
2023-03-29 Ben SoaresJAL-629 Added --opennew --nonews --nosplash. Added...
2023-03-28 Ben SoaresJAL-629 Opening files in new windows. not working yet
2023-03-25 Ben SoaresJAL-629 open initial non-Arg arguments as files in...
2023-03-25 Ben SoaresJAL-629 improvements to argparser toString. Improvement...
2023-03-24 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe...
2023-03-24 James ProcterJAL-4158 first attempt at stashing colours for contact...
2023-03-24 Ben SoaresMerge branch 'develop' into features/r2_11_2_alphafold...
2023-03-24 Ben SoaresJAL-629 Test tidyup
2023-03-23 James ProcterMerge branch 'patch/JAL-4153_flakyJvCacheableInputBoxTe...
2023-03-23 Ben SoaresJAL-629 don't clear appProps in tests
2023-03-23 Ben SoaresJAL-629 refactor ArgParser and helper classes all to...
2023-03-21 Ben SoaresJAL-629 null checks for Desktop.instance.closeAll(...
2023-03-20 James ProcterJAL-4134 override default hasTree so PAE tree is saved!
2023-03-20 James ProcterJAL-4153 longer Thread.sleep() calls in the hope that...
2023-03-20 James ProcterJAL-4134 - missing Jalview project JAXB class - st...
2023-03-20 James ProcterMerge branch 'develop' into features/JAL-4134_treeviewe...
2023-03-20 James ProcterJAL-4150 test and quick patch copying code from AlignFr...
2023-03-20 James ProcterJAL-2349 JAL-4134 Console log messages for contact...
2023-03-20 James ProcterJAL-4134 propagate column selection changes in tree...
2023-03-20 James ProcterJAL-4134 fix off-by-one in selection
2023-03-20 James ProcterJAL-4134 fix NPEs when matrix not resolved or alignment...
2023-03-20 James ProcterJAL-4134 better popup menu name ‘Tree for Contact Matrix’
2023-03-20 James ProcterJAL-2349 test TODOs
2023-03-20 James ProcterJAL-2349 fix off by one when resolving columns for...
2023-03-18 Ben SoaresJAL-629 restore original tests memory settings
2023-03-18 Ben SoaresJAL-629 restore original tests memory settings
2023-03-18 Ben SoaresJAL-629 Check for new commandsSuccess before quit
2023-03-18 Ben SoaresJAL-629 move getdown update to earlier stage
2023-03-18 Ben SoaresJAL-629 Back to forking tests
2023-03-17 Ben SoaresJAL-629 All applications System.exits going through...
2023-03-17 Ben SoaresJAL-629 whittling down options for successful tests
2023-03-17 Ben SoaresJAL-629 whittling down options for successful tests
2023-03-17 James ProcterJAL-4134 fix up column selection when hidden regions...
2023-03-17 James ProcterJAL-4134 store/restore Newick tree for PAE annotation row
2023-03-17 Ben SoaresJAL-629 whittling down options for successful tests
2023-03-17 Ben SoaresJAL-629 whittling down options for successful tests
2023-03-17 Ben SoaresJAL-629 more memory to tests task
2023-03-17 Ben SoaresJAL-629 add in jvmArgs for memory for tests and keep...
2023-03-17 Ben SoaresJAL-629 remove jvmArgs for memory for tests. Increase...
2023-03-17 Ben SoaresJAL-629 Add in jvmArgs for memory for tests
2023-03-16 Ben SoaresJAL-629 closer to normal gradle settings with just...
2023-03-16 Ben SoaresJAL-629 increase test JVM size
2023-03-16 Ben SoaresJAL-629 failFast and new threads for each test
2023-03-16 Ben SoaresJAL-629 increased memory for clover
2023-03-16 Ben SoaresMerge branch 'features/r2_11_2_alphafold/JAL-629' into...
2023-03-16 Ben SoaresJAL-629 revert metal laf
2023-03-16 Ben SoaresJAL-629 Set Metal as default LAF for build server tests
2023-03-16 Ben SoaresJAL-629 fixed a test failing when run without a Jalview...
2023-03-15 James ProcterJAL-4091 JAL-4147 - revised annotation label display...
2023-03-15 James ProcterJAL-4091 JAL-629 ‘Add Reference Annotations’ takes...
2023-03-15 James ProcterJAL-2349 don’t clobber existing label/description...
2023-03-15 James ProcterJAL-4134 JAL-3855 store/restore groups, tree and thresh...
2023-03-15 Ben SoaresJAL-3833 fixed HiDPI test for macOS
2023-03-15 Ben SoaresJAL-629 Commands more objecty, less classy. FileLoader...
2023-03-13 Ben SoaresJAL-629 teardown in CommandsTest
2023-03-12 Ben SoaresJAL-629 Allow substitutions of {} = defaultCounter...
2023-03-11 Ben SoaresJAL-629 --substitutions --nosubstitutions flags, -...
2023-03-11 Ben SoaresJAL-629 Auto and Default count incrementer args. Flags...
2023-03-11 Ben SoaresJAL-629 start of CommandsTest. More ArgParserTests.
2023-03-10 Ben SoaresJAL-629 start of tests and more examples
2023-03-09 Ben SoaresJAL-629 start of tests
2023-03-09 Ben SoaresJAL-629 --argfile=glob implemented. Remove reference...
2023-03-08 Ben SoaresJAL-629 --close individually for each AlignFrame opened...
2023-03-08 Ben SoaresJAL-629 improved comment and return speed of StringUtil...
2023-03-08 James ProcterJAL-2349 handle matrix_clicked on mouse_release rather...
2023-03-08 Ben SoaresJAL-629 --quiet [no stdout], --quiet --quiet [no stderr...
2023-03-08 James ProcterMerge branch 'features/r2_11_2_alphafold/JAL-629' into...
2023-03-08 Ben SoaresJAL-629 Fix --headless for new args. Fix progressbar...
2023-03-08 Ben SoaresJAL-629 stash some TFType and PAEFile info into a PDBEntry
2023-03-06 Ben SoaresJAL-629 Fix null AlignPanel. More descriptive label...
2023-03-03 Ben SoaresJAL-629 Improved consistency of ArgParser classes ...
2023-03-02 Ben SoaresJAL-629 slight tidy up
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