jalview.git
2019-10-09 Mateusz WarownyJAL-3066 Read parameters directly from args list allowi...
2019-10-09 Mateusz WarownyUpdate slivka-client library: multiple form field values.
2019-10-09 Mateusz WarownyJAL-3066 Fix log files retrieval.
2019-10-07 Mateusz WarownyJal-3066 Retrieve job log and error log from the server.
2019-10-07 Jim ProcterRevert "JAL-3070 JAL-3066 fix initialisation of slivka...
2019-10-07 Mateusz WarownyJAL-3066 AACon: pass the instance name of the service...
2019-10-07 Mateusz WarownyJAL-3066 Check if annotation and features are present...
2019-10-07 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi...
2019-10-07 Jim ProcterJAL-3066 report job ID when submitted
2019-10-07 Jim ProcterJAL-3066 debug info: check response when adding feature...
2019-10-07 Jim ProcterJAL-3066 JAL-3070 AACon: pass the name of the service...
2019-10-07 Jim ProcterJAL-3066 hack to instantiate the correct client accordi...
2019-10-07 Jim ProcterJAL-3070 jaba/slivka independent tests for disorder...
2019-10-07 Jim ProcterJAL-3070 JAL-3066 provide standard concrete instances...
2019-10-07 Jim ProcterJAL-3070 JAL-3066 fix initialisation of slivka ServiceW...
2019-10-07 Jim ProcterJAL-3070 use identity equivalence for workers rather...
2019-10-07 Jim ProcterJAL-3070 formatting
2019-10-04 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi...
2019-10-03 Jim ProcterJAL-3070 reinstate the internal test service URL for...
2019-10-03 Jim ProcterJAL-3070 test jabaws and slivka AACon service functionality
2019-10-03 Jim ProcterJAL-3070 slivka service discovery as a background threa...
2019-10-03 Jim ProcterJAL-3070 basic AACon service functionality test
2019-10-03 Jim ProcterJAL-3070 alignment analysis service worker UI and setti...
2019-10-03 Jim ProcterJAL-3070 call checkDone() ASAP to avoid race condition...
2019-10-02 Jim ProcterJAL-3070 decouple WsMenuEntryProviderI code from JABAWS
2019-10-02 Jim ProcterJAL-3070 reorganise prior to refactor
2019-10-02 Jim ProcterJAL-3070 make AlignCalcUI service code work only with...
2019-10-02 Jim ProcterJAL-3070 discoverers return ServiceWithParameter, now...
2019-10-02 Jim ProcterJAL-3070 decontaminate the ‘preferred service’ methods...
2019-10-02 Jim ProcterJAL-3070 JAL-3062 tidy up slivka ws menu builder and...
2019-10-02 Jim ProcterJAL-3070 detect failed/broken annotation web service...
2019-10-02 Jim ProcterJAL-3070 pull up generic methods for an automatic align...
2019-10-02 Jim ProcterJAL-3070 TODO
2019-10-01 Mateusz WarownyJAL-3066 Sequence annotation services.
2019-09-27 Mateusz WarownyJAL-3066 Automatically discoverable Protein sequence...
2019-09-27 Mateusz WarownyMerge remote-tracking branch 'origin/tasks/JAL-3070_wsi...
2019-09-26 Jim ProcterJAL-3070 oops - refactor Slivka’s service stub too :)
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-3067 refactor annotation web...
2019-09-26 Jim ProcterJAL-3070 JAL-3066 JAL-2808 allow feature filter definit...
2019-09-26 Jim ProcterJAL-3070 allow SequenceI.findPositions(0,column+1)...
2019-09-26 Jim ProcterJAL-3070 cope when dataset sequence is passed
2019-09-26 Jim ProcterJAL-3070 JAL-3066 formatting
2019-09-26 Jim ProcterJAL-3070 JAL-3066 AlignmentI.findOrAddAnnotation(Alignm...
2019-09-24 Jim ProcterJAL-3070 tidying
2019-09-23 Jim ProcterJAL-3066 JAL-3070 pull up non-jabaws specific service...
2019-09-23 Mateusz WarownyJAL-3066 Annotation Service Instance stub
2019-09-23 Mateusz WarownySlivkaWSDiscoverer formatting fix
2019-09-23 Mateusz WarownyJAL-3066 Move common web service methods to abstract...
2019-09-23 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha...
2019-09-23 Jim ProcterJAL-3070 configure annotation service manager from...
2019-09-23 Jim ProcterJAL-3070 rename AbstractJabaCalcWorker to SeqAnnotation...
2019-09-23 Jim ProcterJAL-3070 ensure RNAAliFold annotation rows display...
2019-09-23 Jim ProcterJAL-3070 formatting
2019-09-23 Jim ProcterJAL-3070 detect presence of existing JABA RNAAliFold...
2019-09-23 Jim ProcterJAL-3070 match AbstractJabaCalcWorker’s annotation...
2019-09-23 Jim ProcterJAL-3070 javadoc for (mostly) jabaws specific methods
2019-09-20 Jim ProcterJAL-3070 rough-and-ready refactor of JABA SequenceAnnot...
2019-09-20 Jim ProcterJAL-3070 JAL-1379 deferred work on annotation based...
2019-09-20 Jim ProcterJAL-3070 JAL-2507 fix up test output and honour the...
2019-09-19 Mateusz WarownyJAL-3066 Auto discover multiple sequence alignment...
2019-09-17 Jim ProcterJAL-3432 hide the slider when validator has no min...
2019-09-16 Mateusz WarownySet the initial value of the choice field to the defaul...
2019-09-16 Mateusz WarownyAdd the remaining msa services to the Discoverer
2019-09-11 Mateusz WarownyChange choice field to use dropbox instead of radio...
2019-09-11 Mateusz WarownyCreate generic msa service instance
2019-09-06 Mateusz WarownyMerge remote-tracking branch 'origin/alpha/JAL-3066_Jal...
2019-09-06 Mateusz WarownyJAL-3066 Working custom parameters for clustalo
2019-09-06 Jim ProcterJAL-3066 fix compile error (@matesuz - this will confli...
2019-09-06 Jim ProcterJAL_1426 JAL-3066 update Apache James mime parser and...
2019-09-06 Mateusz WarownyJAL-1426 Replacing old apache-http jars.
2019-09-05 Mateusz WarownyJAL-3066 Implement clustaloWS using slivka system.
2019-08-13 Jim ProcterJAL-3362 keep Java 1.8 build happy by specifying generi...
2019-08-13 Jim ProcterMerge branch 'alpha/JAL-3362_Jalview_212_alpha' into...
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans...
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename...
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'...
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId()
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless...
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to...
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight()
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe...
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into
2019-07-26 gmungocJAL-1793 only decode specific special characters in...
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting...
2019-07-15 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-12 ThomasJAL-2629 can now choose number of jackhmmer iterations merge/JAL-3285_mchmmer_with_211_develop
2019-07-12 ThomasJAL-2629 fix faulty label in a MessageManager.getString...
2019-07-12 ThomasJAL-2629 add sort by evalue and bit score
2019-07-12 ThomasJAL-2629 hmmer searches now read domain rather than...
2019-07-11 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop...
2019-07-11 ThomasJAL-2629 hmmer searches include seqs past inclusion...
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