jalview.git
2017-03-16 kiramtJAL-2439 Out-by-one in setting endRes/endSeq
2017-03-15 kiramtJAL-2388 Unit tests and tidies
2017-03-15 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-03-14 kiramtJAL-2388 Working overview panel
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui...
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support...
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding...
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie...
2017-03-09 kiramtJAL-2426 Checks on conservation thread in case we are...
2017-03-09 kiramtJAL-2426 Removal of NPE in conservation thread when...
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit...
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further...
2017-03-07 kiramtJAL-2388 Additional unit tests
2017-03-07 kiramtJAL-2388 Missed commit
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-03-07 kiramtJAL-2429 Messed something up, merged conflicts
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio...
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden...
2017-03-06 kiramtJAL-2388 Dependency tidy
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui...
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated...
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of...
2017-03-01 kiramtJAL-2388 Reverted to previous
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile
2017-02-28 kiramtJAL-2426 Removal of NPE in conservation thread when...
2017-02-28 kiramtJAL-2388 Removing sources of non-determinism in unit...
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp...
2017-02-28 kiramtJAL-2426 Checks on conservation thread in case we are...
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private...
2017-02-27 kiramtJAL-2388 Minor refactoring
2017-02-27 kiramtJAL-2388 Unit tests take 2
2017-02-23 kiramtJAL-2388 Unit tests for columns, take 1
2017-02-23 kiramtJAL-2388 Unit tests in progress
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow
2017-02-21 kiramtJAL-2421 Unit test
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop
2017-02-17 kiramtJAL-2388 Incomplete unit tests
2017-02-17 kiramtJAL-2421 incomplete unit test
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and...
2017-02-16 Jim ProcterMerge branch 'bug/JAL-2374_JAL-2419_overlappinggroups_c...
2017-02-15 Jim ProcterJAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to...
2017-02-15 Jim ProcterJAL-2374 tests for SequenceGroup.contains
2017-02-15 Jim ProcterJAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi...
2017-02-15 Jim ProcterJAL-2374 new contains methods for seq and seq,apos
2017-02-15 Jim ProcterJAL-2374 javadoc - qualify that sequence argument to...
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface...
2017-02-10 gmungocJAL-2371 small move of code, typo correction
2017-02-09 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-09 kiramtJAL-2388 Initial refactor of OverviewPanel
2017-02-09 Jim ProcterMerge branch 'features/JAL-2316' into develop
2017-02-09 Jim ProcterMerge branch 'develop' into features/JAL-2316 features/JAL-2316
2017-02-09 gmungocJAL-2401 tweaked button text, added Spanish
2017-02-09 gmungocJAL-2401 change 'Lower Case Colour' to checkbox with...
2017-02-09 gmungocJAL-2371 no test for lower case consensus as not expect...
2017-02-09 gmungocJAL-2371 ensure some colour scheme (may be None) is...
2017-02-09 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory features/JAL-2379pcaMemory
2017-02-09 gmungocJAL-2371 skip upper-casing consensus as it already is
2017-02-09 gmungocJAL-2405 check for circular reference in SequenceGroup...
2017-02-09 gmungocJAL-2405 set initial selection group alignment context
2017-02-09 gmungocJAL-2405 enable nucleotide/peptide colour schemes in...
2017-02-08 Jim ProcterJAL-2316 tidying preferences help page
2017-02-08 Jim ProcterJAL-2316 tidied up documentation for Links tab
2017-02-08 gmungocJAL-2405 set context on selection group for tailored...
2017-02-08 gmungocJAL-2401 fix for NPE on selectedButtons, tweak for...
2017-02-08 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-02-08 Jim ProcterJAL-2366 updated default URL to jalview.org/services...
2017-02-07 Jim ProcterMerge branch 'features/JAL-2371collectionColourScheme...
2017-02-07 gmungocJAL-2401 Lower Case Colour toggleable, help text added
2017-02-07 gmungocJAL-2379 removed unused commented code
2017-02-07 gmungocJAL-2397 flag provided for 2.10.1 PCA gap calculation...
2017-02-07 gmungocJAL-2398 include 'compatibility mode' for C->R score...
2017-02-07 gmungocJAL-2397 scripts to toggle 2.10.1 / 2.10.2 PCA calculat...
2017-02-07 gmungocJAL-2397 PCA gap cost uses last column of score matrix
2017-02-07 gmungocJAL-2398 corrected entry for C->R in Blosum62 matrix
2017-02-06 gmungocJAL-2379 computePairwiseScores() moved to ScoreMatrix
2017-02-03 gmungocJAL-2379 'direct' pairwise score calculation for PCA...
2017-02-01 gmungocJAL-2371 (slight!) simplification of isApplicableTo()
2017-02-01 gmungocJAL-2383 and Spanish!
2017-01-31 gmungocJAL-2371 commented code removed only
2017-01-31 gmungocJAL-2371 rename global/viewportColourScheme to residueS...
2017-01-31 gmungocJAL-2385 more tests/bug fixes mostly for gui.SliderPane...
2017-01-27 gmungocJAL-2379 commented out code removed
2017-01-27 gmungocJAL-2371 CollectionColourScheme renamed ResidueShader...
2017-01-27 gmungocJAL-2099 belated unit test
2017-01-27 gmungocJAL-2360 JAL-2371 updates from review CR-JAL-1
2017-01-27 kiramtJAL-2366 Removed unneeded setEnabled calls
2017-01-26 gmungocJAL-2360 corrected comment
2017-01-26 gmungocJAL-2360 C is Pink with consensus > 85% (not 100%)
2017-01-26 kiramtMerge remote-tracking branch 'origin/develop' into...
2017-01-26 gmungocMerge branch 'features/JAL-2360colourSchemeApplicabilit...
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2360colourSche...
2017-01-26 kiramtJAL-2316 Updated to use identifiers jalview service
2017-01-26 gmungocMerge branch 'develop' into features/JAL-2379pcaMemory
2017-01-26 gmungocJAL-2344 test fix and code tidy for review comments
2017-01-26 gmungocJAL-2380 code tidy after review
2017-01-25 gmungocJAL-2344 push Cache.getProperty("LAST_DIRECTORY") insid...
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