jalview.git
2012-09-02 jprocterJAL-1062 JAL-659 correct start position for retrieved...
2012-09-02 jprocterJAL-1062 use matching region or first section of sequen...
2012-09-01 jprocterJAL-1075 sort nodes alphabetically
2012-09-01 jprocterJAL-1160 support horizontal mouse wheel scrolling events
2012-09-01 jprocterJAL-1161 JAL-1160 implement custom mousewheel listener...
2012-09-01 jprocterjavadoc
2012-08-31 jprocterJAL-1015 equivalent menu items for applet - not visible...
2012-08-31 jprocterJAL-1015 new menu items in desktop popup menu for creat...
2012-08-31 jprocterJAL-1015 resolve dataset sequence before searching...
2012-08-31 jprocterJAL-1157 new window for displaying HTML formatted text...
2012-08-31 jprocterJAL-1015 refactor tooltip html generation code to jalvi...
2012-08-31 jprocterJAL-974 - ensure annotation created in local sequence...
2012-08-31 jprocterJAL-1064 patch for NPE when registerd database names...
2012-08-29 jprocterJAL-1155 fix panel length calculation for grouped graph...
2012-08-29 jprocterJAL-1066 limit available rows to per-sequence when...
2012-08-29 jprocterJAL-974 skip empty rows
2012-08-29 jprocterJAL-974 set GlobPlot raw/smooth score annotation rows...
2012-08-29 jprocterformatting
2012-08-29 jprocterJAL-1153 JAL-1155 improved layout and allowed labels...
2012-08-29 jprocterJAL-1153 new runtime property set to first non-null...
2012-08-29 jprocterJAL-48 patch NPE when encountering an alignment window...
2012-08-28 jprocterremove contaminant imports
2012-08-28 jprocterremove contaminant imports
2012-08-28 jprocterJAL-676 JAL-1001 - simple menu item to access documenta...
2012-08-28 jprocterformatting
2012-08-28 jprocterJAL-1066 basic gui and functionality for per-sequence...
2012-08-28 jprocterJAL-1066 - per-sequence colouring with sequence associa...
2012-08-28 jprocterformatting
2012-08-28 jprocterJAL-1145 patch: sequence associated annotation with...
2012-08-28 jprocterJAL-974 create mixture of sequence features marking...
2012-08-28 jprocterJAL-974 refactored creation of Annotation rows from...
2012-08-28 jprocterJAL-974 JAL-975 try to cope with temporary server error...
2012-08-28 jprocterJAL-1136 sometimes there are no parameters associated...
2012-08-28 jprocterJAL-1001 - hack to extract the global URL for a service...
2012-08-28 jprocterjavadoc and note about broken semantics for findIndex
2012-08-28 jprocterJAL-1149 patch
2012-08-28 jprocterJAL-1148 reinstate sequence references for annotation...
2012-08-24 jprocterJAL-1087 skip processing any of the other command line...
2012-08-24 jprocterJAL-1143 - ensure we revalidate annotation panel height...
2012-08-23 jprocterJAL-975 JAL-951 test class for viewing layout for JABAW...
2012-08-07 jprocterJAL-1137 clean up old-style menu code and look
2012-08-07 jprocterJAL-1137 JAL-975 simpler menu for the AACon service...
2012-08-07 jprocterDebug message associated with TODO for JAL-1136 - re...
2012-08-07 jprocterJAL-975 JAL-1137 debug messages for web service client...
2012-08-05 jprocterJAL-1131 - todos for later versions
2012-08-05 jprocterJAL-1131 ensure new dataset sequence is created if...
2012-08-03 jprocterJAL-1136 Ensure asynchronously calculated autoannotatio...
2012-08-03 jprocterJAL-1136 JAL-811 JAL-812 store/recover autocalc alignme...
2012-08-03 jprocterJAL-1136 fix logic for recovering AACons params
2012-08-03 jprocterJAL-1136 store ws-parameter list as XML element content...
2012-08-03 jprocterJAL-1136 allow parameter sets to be transferred across...
2012-08-03 jprocterJAL-1136 less code-dependent formula for creating serve...
2012-08-03 jprocterJAL-1136 - fix abstraction for parameter container...
2012-08-03 jprocterJAL-1115 reference to List<SequenceI> passed in 'alignm...
2012-08-02 jprocterJAL-976 better logging/error reporting for disorder...
2012-08-02 jprocterJAL-976 JAL-958 todo list for release
2012-08-01 jprocterJAL-976 ensure protein disorder services appears in...
2012-08-01 jprocterJAL-976 don't clear menu out before adding jabaws servi...
2012-08-01 jprocterJAL-1066 patch regression ac33424148b2a4de29b3ca43f9411...
2012-07-08 jprocterdocumentation for PCA calculation parameters and reset...
2012-07-08 jproctera209409239 (JAL-976 - add support for storing service...
2012-07-08 jprocterJAL-976 clean out associated annotation
2012-07-08 jprocterJAL-976 implement additional calcId method
2012-07-08 jprocterJAL-976 simpler parameter update model
2012-07-08 jprocterJAL-961 JAL-976 allow access to service URI for paramet...
2012-07-08 jprocterJAL-961 JAL-976 recover current settings from associate...
2012-07-08 jprocterJAL-976 pick an available instance of a service based...
2012-07-08 jprocterbugfix - use currently held parameters
2012-07-08 jprocterJAL-976 - storing service parameters on the view model
2012-07-06 jprocterJAL-976 test if the sliders have been modified from...
2012-07-06 jprocterunique URI for service type
2012-07-06 jprocterJAL-961 JAL-976 abstracted container for dynamic calcul...
2012-07-06 jproctertidy imports
2012-07-06 jprocterJAL-976 - add support for storing service parameter...
2012-07-03 jprocterJAL-961 allow calcId to be specified independently...
2012-07-03 jprocterJAL-974 - broken copy of feature settings
2012-07-02 jprocterJAL-1129 progress bar - this patch doesn't provide...
2012-07-02 jprocterJAL-968 incremental - PNG/EPS output has annotation...
2012-07-02 jproctertidy imports
2012-07-02 jprocterJAL-974 create graduated feature colours for annotation...
2012-07-02 jprocterJAL-974 - use refactored methods on AlignmentPanel
2012-07-02 jprocterJAL-974 - refactor FeatureRenderer constructor to Align...
2012-07-01 jprocterJAL-1117 alleviate lock starvation
2012-07-01 jprocterensure all annotation dependent rendering gets refreshed
2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes...
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for...
2012-06-26 jprocterJAL-899 added groovy support to develop branch
2012-06-20 jprocterformatting
2012-06-19 jprocterJAL-976 JAL-975 JAL-1119 - pass on any existing paramet...
2012-06-19 jprocterJAL-975 JAL-1119 - prototype adjustable AACons paramete...
2012-06-19 jprocterJAL-975 - doh! valid result if width matches *ungapped...
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save curren...
2012-06-19 jprocterpatch for JAL-1172 ensure option's default value is...
2012-06-19 jprocterJAL-961 JAL-975 extend api to support removal of worker...
2012-06-19 jprocterJAL-975 - ensure we only submit ungapped, padded alignm...
2012-06-15 jprocterformatting
2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace...
2012-06-15 jprocterfix JAL-1122
2012-06-15 jprocterJAL-1123 - make clear where off-by-one error was occuri...
2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel
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