jalview.git
2018-08-13 gmungocscrubbing HMM classes on spike-mungo
2018-08-13 gmungocupdate spikes/mungo from JAL-3076 patch branch
2018-05-30 gmungocUpdate spike branch to latest (HMMSearch file chooser...
2018-05-23 gmungocUpdate spike branch to latest
2018-05-14 gmungocUpdate spike branch to latest
2018-05-11 gmungocJAL-2629 push latest to spike branch
2018-05-11 gmungocJAL-2629 update spike branch to latest
2018-04-23 gmungocJAL-2957 don't validate input on arrow keys
2018-04-23 gmungocJAL-591 ensure slider hidden if text input field only
2018-04-20 gmungocJAL-2629 update spikes/mungo to latest
2018-03-30 gmungocUpdated with latest from mchmmer branch
2018-02-09 gmungocJAL-1793 update spike to latest
2018-02-05 gmungocJAL-2897 more informative description on synonymous...
2018-02-02 gmungocJAL-984 merged to spikes-mungo
2018-01-30 gmungocJAL-1793 update spike build to latest incl stop and...
2018-01-10 gmungocJAL-1793 update spike branch to latest
2017-12-04 gmungocJAL-2808 JAL-2850 update spike build to latest
2017-12-04 gmungocJAL-2850 JAL-1766 option to load contig sequence refere...
2017-12-04 gmungocJAL-2845 locate reverse strand insertion as complement...
2017-12-04 gmungocJAL-2835 small refactor to only extract transcript...
2017-12-01 gmungocJAL-2835 spike updated to latest (use specific SO term...
2017-11-24 gmungocJAL-2808 update spike to latest
2017-11-23 gmungocJAL-2808 update spike to latest (filter range tooltip...
2017-11-23 gmungocJAL-2808 update spike to latest (filter range, Present...
2017-11-22 gmungocJAL-2069 spike updated with latest (FeatureTypeSettings)
2017-11-15 gmungocJAL-2835 spike updated with latest
2017-11-08 gmungocJAL-2069 updated spike to latest
2017-11-07 gmungocJAL-2069 update spike to latest (no value colour options)
2017-11-07 gmungocJAL-2069 update spike with latest
2017-11-07 gmungocJAL-2069 update spike branch with latest
2017-11-02 gmungocJAL-2808 spike updated with latest
2017-10-27 gmungocJAL-2754 rename proguard.jar on spike branch
2017-10-27 gmungocJAL-2754 spike branch updated to latest
2017-10-27 gmungocJAL-2754 5.3.3 update of proguard.jar
2017-10-27 gmungocJAL-1793 spike branch updated to latest
2017-10-24 gmungocJAL-2738 update spike branch with latest
2017-10-20 gmungocPush 1793 latest to spike branch
2017-10-05 gmungocJAL-2738 update spikes/mungo
2017-10-04 gmungocMerge branch 'features/JAL-1793VCF' into spikes/mungo
2017-10-04 gmungocJAL-2738 fix bug of premature exit from adding attributes
2017-10-04 gmungocJAL-2738 match consequence "Allele" to VCF allele;...
2017-10-04 gmungocJAL-2744 handle null features list
2017-10-03 gmungocJAL-2738 copy to spikes/mungo
2017-10-03 gmungocJAL-2738 update test for threaded VCFLoader
2017-10-03 gmungocJAL-2738 code formatting
2017-10-02 gmungocJAL-2738 code tidy up, null checks &c
2017-10-02 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-10-02 gmungocJAL-2525 lookup transcript features by Ontology
2017-10-02 gmungocJAL-2738 filter VEP consequence data to that for curren...
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterJAL-2748 JAL-2745 remove uniprot from EBI fetch client...
2017-09-29 Jim ProcterJAL-2745 patch tests for https
2017-09-29 Jim ProcterJAL-2748 formatting
2017-09-29 Jim ProcterJAL-2745 JAL-2748 direct download of XML from uniprot.org
2017-09-29 gmungocJAL-2738 one sequence feature per (SNP) VCF allele
2017-09-29 gmungocJAL-2744 indent CSQ lines to catch the eye
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterRevert "JAL-2745 update SIFTS FTP URL to HTTPS"
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterJAL-2745 update default EBI-eye search URL to HTTPS feature/JAL-2745ebiHttps
2017-09-29 Jim ProcterJAL-2745 update SIFTS FTP URL to HTTPS
2017-09-29 Jim ProcterMerge branch 'feature/JAL-2745ebiHttps' into develop
2017-09-29 Jim ProcterJAL-2745 stderr rather than stdout for unexpected HTTP...
2017-09-28 gmungocJAL-2745 update www.ebi.ac.uk to https
2017-09-28 gmungocJAL-2738 separate thread to load VCF; update FeatureSet...
2017-09-28 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-28 gmungocJAL-2036 set menus after fully loading AlignFrame
2017-09-28 gmungocJAL-1796 GeneLociI as distinguished DBRefEntry
2017-09-28 gmungocJAL-2744 simple Feature Details report from Popup menu
2017-09-28 gmungocJAL-2744 refactor PopupMenu constructor to enable addin...
2017-09-26 gmungocJAL-2738 transfer VCF variant features to CDS sequences
2017-09-26 gmungocJAL-2738 JAL-2154 add DBRef from transcript to synthesi...
2017-09-26 gmungocJAL-2738 unit test for reverse strand gene
2017-09-26 gmungocJAL-2738 promote setGeneLoci to SequenceI!
2017-09-25 gmungocJAL-2738 use complement base for a VCF variant on rever...
2017-09-25 gmungocJAL-2738 getGeneLoci promoted to SequenceI
2017-09-25 gmungocMerge branch 'develop' into features/JAL-1793VCF
2017-09-25 gmungocJAL-2525 return no features if none matches ontology...
2017-09-25 gmungocJAL-2738 query unindexed file, unit test for VCFLoader
2017-09-25 gmungocJAL-2738 one constant in codebase for "alleles" attribu...
2017-09-25 gmungocJAL-2738 extract SNP variants from SNP or MIXED variant...
2017-09-22 gmungocJAL-2738 extract utility method to MappingUtils
2017-09-22 gmungocJAL-2738 correct handling of reverse strand genes
2017-09-22 gmungocJAL-2738 lookup GRCh38/37 gene mapping
2017-09-21 gmungocJAL-2738 compute VCF on peptide, extract AF (allele...
2017-09-21 gmungocJAL-2738 add chromosome coordinate mappings to transcripts
2017-09-21 gmungocJAL-2738 PoC of Load VCF file on to gene sequence
2017-09-21 gmungocJAL-2738 GeneLoci holds mapping of sequence to chromosome
2017-09-20 kiramtJAL-2662 Adjustments to hidden columns benchmark
2017-09-19 gmungocJAL-1793 wrapper for plain or indexed VCF + simple...
2017-09-19 kiramtJAL-2662 Updated README
2017-09-19 kiramtJAL-2737 Checkstyle error fixes
2017-09-19 kiramtJAL-2622 Tidied up gitignore, added to README
2017-09-19 kiramtMerge branch 'develop' of https://source.jalview.org...
2017-09-19 kiramtMerge remote-tracking branch 'origin/task/JAL-2662...
2017-09-19 gmungocJAL-1793 simple tests of reading raw and indexed VCF...
2017-09-18 gmungocMerge remote-tracking branch 'origin/patch/JAL-2732...
2017-09-18 gmungocJAL-2728 fine tuned initial split of split frame view
2017-09-15 Jim ProcterMerge branch 'documentation/JAL-2698_release2103' into...
2017-09-15 Jim ProcterJAL-2698 new releases.html entry, whatsNew.html and...
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