jalview.git
2014-11-13 Jim ProcterMerge branch 'features/JAL-1469_svg-output-for-figure...
2014-11-13 Jim ProcterJAL-1469 added jfreesvg to desktop dependencies
2014-11-13 gmungocMerge branch 'develop' of https://source.jalview.org...
2014-11-13 gmungocmerge
2014-11-13 gmungocJAL-1528 new Preference CHIMERA_PATH (Preferences ...
2014-11-13 gmungocJAL-1528 Chimera tidy errors, focus after align, close...
2014-11-12 Charles Ofoegbuhouse-keeping
2014-11-12 Charles OfoegbuAdded support for SVG Export
2014-11-12 gmungocJAL-1528 bug fixes and adjustments to Chimera interface
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-12 Jim ProcterJAL-1541 exclude all unnecessary jalview.io classes...
2014-11-12 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-12 Jim ProcterMerge branch 'develop' into features/JAL-1541_BioJsMSAV...
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
2014-11-12 Jim ProcterJAL-974 fix class contamination for jalviewLite build
2014-11-12 gmungocMerge branch 'develop' of https://source.jalview.org...
2014-11-12 Jim ProcterMerge branch 'features/typed_annotations_calcId' into...
2014-11-12 Jim Procterjavadoc
2014-11-12 Jim ProcterJAL-674 use the getMapping/transfer to transfer annotat...
2014-11-12 Jim ProcterJAL-674 patch broken getMapping function
2014-11-12 Jim ProcterJAL-674 switch from .transfer to .liftOver for transfer...
2014-11-12 Jim ProcterJAL-674 note about broken .transfer method (expect...
2014-11-12 Jim ProcterJAL-674 javadoc
2014-11-12 Jim ProcterJAL-674 new tests and deprecated tests for PDB mapping...
2014-11-12 Charles OfoegbuExcluded HtmlFile.java dependencies from AppletFomatAdapter
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-11-12 Charles Ofoegbumearge with develop
2014-11-12 Jim ProcterJAL-1541 added Jsoup to the InstallAnywhere config
2014-11-12 Charles OfoegbuModified biojs exporter/importer to preserve SequenceFe...
2014-11-11 gmungocJAL-1527 opening a project saved with JMol should use...
2014-11-07 Charles OfoegbuUpdated BioJsTemplate to not show the menu by default...
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to clean up and close...
2014-11-07 Charles OfoegbuModified BioJsHTMLOutput.java to use class loader while...
2014-11-06 Charles OfoegbuChanges from JAL-1541 patch
2014-11-06 Charles OfoegbuUpdated BioJs Html to be capable of launching jalivew
2014-11-06 Jim ProcterMerge branch 'features/JAL-1152annotationSorting' into...
2014-11-06 Jim ProcterMerge branch 'features/JAL-1541_BioJsMSAViewer-export...
2014-11-06 gmungocJAL-1152 use a proper RadioButton not a faked one
2014-11-05 gmungocJAL-674 Prefences tweaks incl help documentation for...
2014-11-05 gmungocJAL-1152 new Structure tab on Preferences for SS deriva...
2014-11-04 gmungocJAL-1152 help updates for Preferences
2014-11-04 gmungocJAL-1152 annotation sort algorithm optimisation
2014-11-04 Jim ProcterJAL-1213 normalise sequence extracted from Jmol in...
2014-11-04 Jim ProcterJAL-1213 test to ensure JMol extracted sequences are...
2014-11-03 gmungocMerge branch 'features/JAL-1152annotationSorting' of...
2014-11-03 gmungocJAL-1152 annotation sorting preferences and help docume...
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation...
2014-11-03 Jim ProcterMerge branch 'bug/JAL-1250_redundance-removal' into...
2014-11-03 Jim ProcterMerge branch 'develop' into features/JAL-1152annotation...
2014-11-03 Jim ProcterMerge branch 'features/ssFromPDBEntry' into develop
2014-11-03 Jim ProcterJAL-795 JAL-674 tweaked logic to avoid black annotation...
2014-11-03 Jim Procterfix for JAL-1579 create threshold object for annotation...
2014-11-03 Jim ProcterJAL-1578 test property accessors/copy constructor
2014-11-03 Jim ProcterJAL-1578 JAL-674 store/restore alignment annotation...
2014-11-03 Jim ProcterJAL-1578 formatting and imports
2014-11-03 Jim ProcterJAL-674 peptide structure input so test is not dependen...
2014-11-03 Jim ProcterJAL-1551 formatting
2014-11-03 Jim ProcterJAL-674 JAL-961 JAL-1578 accessors and copy constructor...
2014-11-03 Jim Procterjavadoc
2014-10-31 gmungocJAL-1152 bug fix for 'no sort' case + tests for autocal...
2014-10-31 gmungocJAL-1152 menu tweaks plus new option to put Autocalc...
2014-10-31 Jim ProcterJAL-674 JAL-961 pass row reference to handler to check...
2014-10-31 Jim ProcterJAL-674 JAL-961 properties to stash additional informat...
2014-10-31 Charles Ofoegbuadded jsoup lib to class path
2014-10-31 Charles OfoegbuJAL-1541 upadated BioJs emmitter to store alignment...
2014-10-30 Jim ProcterMerge branch 'develop' into features/ssFromPDBEntry
2014-10-30 Jim ProcterJAL-674 hang on to sequences created by secondary parsi...
2014-10-30 Jim ProcterJAL-674 count number of annotation transferred in test
2014-10-30 gmungocJAL-1152 with sticky annotation sort order that updates...
2014-10-30 Jim ProcterJAL-674 propagate annotation onto mapped sequence and...
2014-10-30 Jim ProcterJAL-674 register PDB IDs when ever they are resolved...
2014-10-30 Jim ProcterJAL-674 use PDB ID<>File registry to look up correct...
2014-10-30 Jim ProcterJAL-674 return original and replacement sequences and...
2014-10-30 Jim ProcterJAL-674 helpful javadoc for remap method
2014-10-30 Jim ProcterJAL-674 flag and proxy method to distinguish setMapping...
2014-10-30 Jim ProcterJAL-674 map on StructureSelectionManager to record...
2014-10-30 Jim Procterpatch for JAL-795 - use base secondary structure colour...
2014-10-30 Jim ProcterJAL-674 patch test to verify presence of annotation...
2014-10-30 Jim ProcterJAL-1551 format and tidy
2014-10-30 gmungocJAL-1152 prototype of new Annotations menu with sort...
2014-10-30 Charles OfoegbuJAL-353 updated patch for undo successive remove redund...
2014-10-30 Charles OfoegbuModified biojs template file
2014-10-30 Charles OfoegbuJAL-1541 BioJs MSA Viewer export option implementation
2014-10-29 Charles OfoegbuJAL-353 updated patch for undo successive remove redund...
2014-10-29 Jim ProcterJAL-1264 JAL-674 test to exercise the AlignmentAnnotati...
2014-10-29 Jim ProcterJAL-1264 JAL-674 method to copy annotation on structure...
2014-10-29 Jim ProcterJAL-674 JAL-1264 remap method to allow annotation posit...
2014-10-28 gmungocMerge branch 'develop' of https://source.jalview.org...
2014-10-28 gmungocJAL-1264 refactor to add menu options to _both_ sequenc...
2014-10-28 Charles Ofoegbu2_8_2_Branch merge
2014-10-28 Charles OfoegbuJAL-353 undo for successive removal of redundant sequen...
2014-10-28 Charles OfoegbuJAL-1250 Redundancy removal bug fix for Applet version
2014-10-27 Jim ProcterMerge branch 'develop' into Release_2_8_2_Branch
2014-10-27 Jim ProcterMerge branch 'Release_2_8_2_Branch' into merge_r282_dev
2014-10-27 Charles OfoegbuUpdated RedundancyPanel.java to referesh the tree view...
2014-10-27 Charles OfoegbuPatch for redundancy removal
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch
2014-10-23 Jim ProcterMerge branch 'hotfix/JAL-1521' into develop
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