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jalview.git
2017-11-02 gmungocJAL-2808 refactored getColor() checks feature visibility commit | commitdiff | tree | snapshot
2017-11-02 gmungocJAL-2808 feature filters held on FeatureRenderer, getCo... commit | commitdiff | tree | snapshot
2017-11-02 gmungocJAL-2808 convenience method to get attribute as String commit | commitdiff | tree | snapshot
2017-11-02 gmungocJAL-2808 attribute filtering removed, extract method... commit | commitdiff | tree | snapshot
2017-11-02 gmungocJAL-2808 reverted to develop (attribute filters removed) commit | commitdiff | tree | snapshot
2017-11-02 gmungocJAL-2808 toString modified, tests corrected commit | commitdiff | tree | snapshot
2017-10-31 gmungocMerge branch 'bug/JAL-2791selectVisibleFeatures' into commit | commitdiff | tree | snapshot
2017-10-31 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-10-31 gmungocJAL-2791 select columns by _visible_ features commit | commitdiff | tree | snapshot
2017-10-31 gmungocJAL-2808 revised util.matcher package, 2 filter conditi... commit | commitdiff | tree | snapshot
2017-10-31 gmungocJAL-2792 test updated for 3 column table commit | commitdiff | tree | snapshot
2017-10-31 gmungocJAL-2808 reduce code with WindowAdapter commit | commitdiff | tree | snapshot
2017-10-30 gmungocJAL-2791 check feature visibility when selecting columns commit | commitdiff | tree | snapshot
2017-10-30 gmungocJAL-2808 add attribute filter options to graduate colou... commit | commitdiff | tree | snapshot
2017-10-30 gmungocJAL-2792 Javadoc updates commit | commitdiff | tree | snapshot
2017-10-30 gmungocJAL-2808 add attribute filter(s) to FeatureColour commit | commitdiff | tree | snapshot
2017-10-30 gmungocJAL-2808 remember attribute keys by feature type commit | commitdiff | tree | snapshot
2017-10-30 gmungocJAL-2808 classes to support filtering by attribute... commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2526 updated javadoc commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2754 renamed proguard.jar to include version number commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2754 updated proguard.jar to 5.3.3 commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2792 include source in copy constructor; null point... commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2754 update to specify Java 1.8(+) commit | commitdiff | tree | snapshot
2017-10-27 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-10-27 gmungocJAL-2792 capture feature metadata and render in Feature... commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2698 update version and cut release branch commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2546 release notes commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2488 patch causes of NPE during testStoreAndRecover... commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterMerge branch 'feature/JAL-2488finalize' into develop commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2036 2.10.3 release notes commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2793 cancelling font changed dialog didn't call... commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2548 release notes commit | commitdiff | tree | snapshot
2017-10-26 gmungocMerge branch 'develop' into features/JAL-1793VCF commit | commitdiff | tree | snapshot
2017-10-26 gmungocJAL-2792 html table for Feature Details report commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterMerge branch 'bug/JAL-2776toggleGroupColour' into develop commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2684 JAL-2685 release notes commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2685 tidy up html doc commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterMerge branch 'features/JAL-2685pairwiseSeqLimits' into... commit | commitdiff | tree | snapshot
2017-10-26 Jim ProcterJAL-2392 test asserts for progressbar creation on the... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2617 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2617mappedStopCodon' into develop commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2636 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2667 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2667mouseWheelWrapped' into develop commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2727 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2727 add not to Test failed message recommending... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2727closeAllFreeMemory' into... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2732 JAL-1900 JAL-1625 release notes commit | commitdiff | tree | snapshot
2017-10-25 gmungocJAL-2743 fall back to parsing description if chromosome... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bugs/JAL-2779_osx_dialogsequencingbroke... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2779 remove empty block and if statement commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2790 JAL-2392 release notes commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterMerge branch 'bug/JAL-2392_deadlockonpdbdisplay' into... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2790 provide a cancel button for JABAWS and AACon... commit | commitdiff | tree | snapshot
2017-10-25 Jim ProcterJAL-2392 auto boxing rather than explicit Long as key commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2495 release notes commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2495 highlight all mapped sequences from structure... commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2643 JAL-2524 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2524 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2733 JAL-2658 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-1980 release notes (retrodoc for 2.10.0) commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2687 JAL-2608 release notes commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterMerge branch 'features/JAL-2608closeOverview' into... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2743 slightly fancier species/assembly matching... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2738 tidy Javadoc, remove debug logging commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2743 look up species and gene loci for Ensembl... commit | commitdiff | tree | snapshot
2017-10-24 Jim ProcterJAL-2542 release notes commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-1739 Javadoc updated for Lambda expression parser... commit | commitdiff | tree | snapshot
2017-10-24 gmungocMerge branch 'develop' into features/JAL-1793VCF; lambd... commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2788 corrected merge error in propertyChange commit | commitdiff | tree | snapshot
2017-10-24 gmungocJAL-2787 set start/end seq explicitly for test commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2609 remove unused AlignPanel.fastPaint flag and... commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2609attemptedmerge' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2768 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2739 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2739' into develop commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2682 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2682parseId' into develop commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-2776 repaint everything on toggle group colour bug/JAL-2776toggleGroupColour commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterJAL-2253 release notes commit | commitdiff | tree | snapshot
2017-10-23 Jim ProcterMerge branch 'bug/JAL-2253' into develop commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 keep fallthrough but with comment to suppress... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-1854 remove fallthrough of switch case (Checkstyle... commit | commitdiff | tree | snapshot
2017-10-23 gmungocJAL-2737 JAL-1854 corrected package suppressions, updat... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-2779 keep a reference to original Aqua manager... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-2779 remove OSX platform specific import (not neede... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 fix NPE when no selection available commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 only generate matrix for current selection... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 PID script in release notes commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterMerge branch 'patch/JAL-547_pid_groovyscript' into... commit | commitdiff | tree | snapshot
2017-10-20 Jim ProcterJAL-547 updated the PID script for 2.10.x series score... commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2253 pull up constant, additional unit test bug/JAL-2253 commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2755 update caller for method rename! commit | commitdiff | tree | snapshot
2017-10-20 gmungocJAL-2609 fully erase scale above, tidy code change commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2609 adjustments for test findings commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 find gene loci for fetched xrefs where possible commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 put chromosomal dbref first in report commit | commitdiff | tree | snapshot
2017-10-19 gmungocJAL-2755 add lookup of cds/cdna gene loci commit | commitdiff | tree | snapshot
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